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Projects in Awesome Lists tagged with genome-scale-models
A curated list of projects in awesome lists tagged with genome-scale-models .
https://github.com/sysbiochalmers/raven
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
constraint-based-modeling gap-filling genome-scale-models human-metabolism metabolic-engineering metabolic-models metabolic-reconstruction sysbio systems-biology
Last synced: 21 Dec 2024
https://github.com/sysbiochalmers/yeast-gem
The consensus GEM for Saccharomyces cerevisiae
biology consensus genome-scale-models hacktoberfest matlab metabolic-models python reconstruction saccharomyces-cerevisiae standard-gem systems-biology yeast
Last synced: 22 Dec 2024
https://github.com/sysbiochalmers/human-gem
The generic genome-scale metabolic model of Homo sapiens
genome-scale-models human-metabolism standard-gem
Last synced: 16 Dec 2024
https://github.com/sysbiochalmers/ecmodels
A container for all enzyme constrained models created by GECKO.
genome-scale-models kinetics metabolism systems-biology
Last synced: 03 Dec 2024
https://github.com/sysbiochalmers/yarrowia_lipolytica_w29-gem
Genome-scale model of Yarrowia lipolytica.
constraint-based-modeling genome-scale-models metabolic-engineering metabolic-models metabolic-network metabolic-reconstruction omics-data-integration stoichiometric-reactions systems-biology yarrowia-lipolytica
Last synced: 03 Dec 2024
https://github.com/lobolab/mergem
mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models
genome-scale-models sbml systems-biology
Last synced: 29 Nov 2024
https://github.com/sysbiochalmers/streptomyces_coelicolor-gem
Genome-scale model of Streptomyces coelicolor.
Last synced: 03 Dec 2024
https://github.com/sysbiochalmers/kluyveromyces_marxianus-gem
The consensus GEM for Kluyveromyces marxianus
genome-scale-models kluyveromyces-marxianus systems-biology
Last synced: 03 Dec 2024
https://github.com/sysbiochalmers/enzymeconstrained_humanmodels
Collection of scripts for enhancing humanGEM based models with kinetic and proteomics constraints and specialized simulation utilities.
enzyme-constraints genome-scale-models kinetics proteomics-data-integration systems-biology
Last synced: 03 Dec 2024
https://github.com/sysbiochalmers/rhto-gem
Genome-scale metabolic model of Rhodotorula toruloides
constraint-based-modeling genome-scale-models metabolic-engineering metabolic-reconstruction sysbio systems-biology yeast
Last synced: 03 Dec 2024
https://github.com/sysbiochalmers/childrengutmicrobialgems
58 GEMs for gut bacterial species from microbiota of healthy and malnourished children.
Last synced: 03 Dec 2024
https://github.com/sysbiochalmers/overflow
Supplementary code and results from doi:10.1101/2020.02.20.957662
genome-scale-models metabolism proteomics yeast
Last synced: 03 Dec 2024
https://github.com/sysbiochalmers/cofactoryeast
Integration of cofactors with proteome-constrained model of Saccharomyces cerevisiae
Last synced: 03 Dec 2024
https://github.com/sysbiochalmers/pclactis
Proteome-constrained model of Lactococcus lactis
genome-scale-models metabolism proteome-constraint
Last synced: 03 Dec 2024