Projects in Awesome Lists tagged with omics-data-integration

https://github.com/cafferychen777/microbiomestat

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

16s-rrna amplicon-sequencing dada2 longitudinal-data metagenomes metagenomic-analysis microbiome microbiome-analysis microbiome-data microbiome-workflow omics omics-data-integration phyloseq qiime2 statistics visualization

Last synced: 16 Apr 2025

https://github.com/krassowski/multi-omics-state-of-the-field

Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"

binder-ready integrative-omics multi-omics omics omics-data-integration papers-with-code

Last synced: 13 Apr 2025

https://github.com/futianfan/genocraft

GenoCraft: A Comprehensive, User-Friendly Web Platform for High-Throughput Omics Data Analysis and Visualization (https://arxiv.org/pdf/2312.14249)

bulk-rna-seq flask genomics multiomics next-generation-sequencing ngs omics omics-data-integration pathway-analysis protein rna-seq single-cell visualization

Last synced: 12 Oct 2025

https://github.com/m4i-imaging-mass-spectrometry/thyra

A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.

bioinformatics bruker data-conversion ecuypers-group imzml m4i-cuypers-group mass-spectrometry mass-spectrometry-imaging msi omics-data-integration scientific-computing spatial-omics spatialdata zarr

Last synced: 25 Feb 2026

https://github.com/sysbiochalmers/yarrowia_lipolytica_w29-gem

Genome-scale model of Yarrowia lipolytica.

constraint-based-modeling genome-scale-models metabolic-engineering metabolic-models metabolic-network metabolic-reconstruction omics-data-integration stoichiometric-reactions systems-biology yarrowia-lipolytica

Last synced: 04 Jul 2025

https://github.com/metexplore/dexom

Diversity-based enumeration of optimal context-specific metabolic networks

cobra-toolbox constraint-based-modeling metabolic-engineering metabolic-network metabolic-pathways metabolic-reconstruction metabolism omics-data-integration optimization

Last synced: 14 Oct 2025

https://github.com/cafferychen777/microbiomestat-turtorial-professional-version

MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.

16s 16s-rrna 16s-seq analysis data-analysis metagenomes metagenomic-analysis metagenomic-pipeline metagenomics microbiome microbiome-analysis microbiome-analysis-pipelines microbiome-data microbiome-workflow omics omics-data omics-data-analysis omics-data-integration visualization

Last synced: 03 Jan 2026

https://github.com/metexplore/dexom-python

diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library

cobrapy constraint-based-modeling metabolism omics-data-integration optimization python

Last synced: 24 Aug 2025

https://github.com/ocbe-uio/bayessurvive

Bayesian survival models for high-dimensional data

bayesian-cox-models bayesian-variable-selection graph-learning high-dimensional-statistics omics-data-integration survival-analysis

Last synced: 15 Mar 2025

https://github.com/qwerty239qwe/pipegem

This is a package for visualizing and analyzing multiple metabolic models. It also allow users to integrate omic data, metabolic tasks, and medium data with genome-scale metabolic models (GEMs).

constraint-based-modeling genome-scale-metabolic-model metabolic-models omics-data-integration

Last synced: 20 Jan 2026