Projects in Awesome Lists tagged with omics-data-integration
A curated list of projects in awesome lists tagged with omics-data-integration .
https://github.com/cafferychen777/microbiomestat
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
16s-rrna amplicon-sequencing dada2 longitudinal-data metagenomes metagenomic-analysis microbiome microbiome-analysis microbiome-data microbiome-workflow omics omics-data-integration phyloseq qiime2 statistics visualization
Last synced: 16 Apr 2025
https://github.com/krassowski/multi-omics-state-of-the-field
Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
binder-ready integrative-omics multi-omics omics omics-data-integration papers-with-code
Last synced: 13 Apr 2025
https://github.com/sysbiochalmers/yarrowia_lipolytica_w29-gem
Genome-scale model of Yarrowia lipolytica.
constraint-based-modeling genome-scale-models metabolic-engineering metabolic-models metabolic-network metabolic-reconstruction omics-data-integration stoichiometric-reactions systems-biology yarrowia-lipolytica
Last synced: 03 Dec 2024
https://github.com/metexplore/dexom
Diversity-based enumeration of optimal context-specific metabolic networks
cobra-toolbox constraint-based-modeling metabolic-engineering metabolic-network metabolic-pathways metabolic-reconstruction metabolism omics-data-integration optimization
Last synced: 31 Jan 2025
https://github.com/cafferychen777/microbiomestat-turtorial-professional-version
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
16s 16s-rrna 16s-seq analysis data-analysis metagenomes metagenomic-analysis metagenomic-pipeline metagenomics microbiome microbiome-analysis microbiome-analysis-pipelines microbiome-data microbiome-workflow omics omics-data omics-data-analysis omics-data-integration visualization
Last synced: 16 Mar 2025
https://github.com/metexplore/dexom-python
diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library
cobrapy constraint-based-modeling metabolism omics-data-integration optimization python
Last synced: 14 Apr 2025
https://github.com/ocbe-uio/bayessurvive
Bayesian survival models for high-dimensional data
bayesian-cox-models bayesian-variable-selection graph-learning high-dimensional-statistics omics-data-integration survival-analysis
Last synced: 15 Mar 2025
https://github.com/krassowski/meningitis-integration
Discovering biomarkers for meningitis by multivariate integration of multi-omics and clinical data
meningitis omics omics-data-integration proteomics transcriptomics
Last synced: 05 Mar 2025
https://github.com/multiomics-analytics-group/acore
Functionality to preprocess and analyse multi-omics data
analysis omics omics-data-integration preprocessing-data
Last synced: 12 Apr 2025
