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Projects in Awesome Lists tagged with multi-omics

A curated list of projects in awesome lists tagged with multi-omics .

https://github.com/scverse/mudata

Multimodal Data (.h5mu) implementation for Python

anndata data-analysis genomics mudata multi-omics multimodal-omics-analysis muon scverse

Last synced: 07 Jul 2025

https://github.com/BIMSBbioinfo/maui

Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

autoencoder bioinformatics cancer-genomics deep-learning latent-factor-model multi-omics

Last synced: 13 Apr 2025

https://github.com/wukevin/babel

Deep learning model for single-cell inference of multi-omic profiles from a single input modality.

deep-neural-networks multi-omics scatac-seq scrna-seq single-cell

Last synced: 10 Apr 2025

https://github.com/zhangxiaoyu11/OmiEmbed

Multi-task deep learning framework for multi-omics data analysis

cancer deep-learning multi-omics multi-task-learning

Last synced: 08 May 2025

https://github.com/biobakery/melonnpan

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

biobakery bioconductor machine-learning metabolite-compounds metabolite-prediction metabolomics metagenomics microbial-communities microbiome multi-omics public tools

Last synced: 30 Oct 2025

https://github.com/jonnytran/openomics

A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.

data-integration data-manipulation genomics multi-omics python

Last synced: 16 Mar 2025

https://github.com/JonnyTran/OpenOmics

A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.

data-integration data-manipulation genomics multi-omics python

Last synced: 18 Mar 2025

https://github.com/krassowski/multi-omics-state-of-the-field

Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"

binder-ready integrative-omics multi-omics omics omics-data-integration papers-with-code

Last synced: 13 Apr 2025

https://github.com/abodein/timeOmics

Time-Course Multi-Omics data integration

cluster integration multi-omics time-series

Last synced: 26 Mar 2025

https://github.com/krassowski/drug-disease-profile-matching

Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap

drug-discovery drug-repurposing gct l1000 lincs multi-omics stratification

Last synced: 13 Apr 2025

https://github.com/laminetourelab/mogonet

MOGONET (Multi-Omics Graph cOnvolutional NETworks) is multi-omics data integrative analysis framework for classification tasks in biomedical applications.

deep-learning graph-convolutional-networks machine-learning mogonet multi-omics multi-omics-integration multimodal-deep-learning pytorch

Last synced: 11 Mar 2026

https://github.com/becavin-lab/bacnet

BACNET is a Java based platform to develop website for multi-omics analysis

bacnet bioinformatics data-visualization genomics listeria multi-omics proteomics transcriptomics website

Last synced: 09 Apr 2026

https://github.com/scverse/muon-tutorials

Tutorials for multimodal omics data analysis

mudata multi-omics muon scverse single-cell

Last synced: 26 Oct 2025

https://github.com/guokai8/o2plsda

Omics data integration with o2plsda

integration multi-omics o2pls omics plsda

Last synced: 02 Apr 2026

https://github.com/acabassi/coca

R package for COCA: Cluster-of-Clusters Analysis

cluster-analysis cluster-of-clusters clustering coca genomics integrative-clustering multi-omics

Last synced: 22 Oct 2025

https://github.com/ilia-kats/mudata

MuData-compatible storage for bioconductor's MultiAssayExperiment

anndata bioconductor mudata multi-omics multimodal-omics scrna-seq

Last synced: 24 Aug 2025

https://github.com/secrierlab/cancerg0arrest

Evaluation of cell cycle arrest from transcriptomics data.

cancer dormancy multi-omics quiescence

Last synced: 17 Jan 2026

https://github.com/karenxzr/multinep

MultiNEP: a Multi-omics Network Enhancement framework for Prioritizing disease genes and metabolites simultanuously

multi-omics network-analysis signal-prioritization

Last synced: 18 Sep 2025

https://github.com/sdsc-ordes/modos-api

Python API to manage multi-omics digital objects

cli fair metadata multi-omics omics rest-api

Last synced: 08 Feb 2026

https://github.com/pinellolab/simstpy

A framework for simulation of spatially-resolved omics data using python

atac-seq cite-seq cut-tag-seq multi-omics rna-seq simulation spatial

Last synced: 25 Feb 2026

https://github.com/tonyliang19/spatial_classifier

Repo for testing multiple papers related to multi-omics

bioinformatics multi-omics pipeline python r

Last synced: 19 Apr 2026

https://github.com/laminetourelab/netics-multi-omics

NetICS: network-based integration of multi-omics data for prioritizing cancer genes

cancer-genomics multi-omics multi-omics-data multi-omics-integration netics prioritization-algorithm

Last synced: 01 Sep 2025

https://github.com/bhi-kimlab/neticspy

Python implementation of NetICS (Network-based Integration of Multi-omics data).

bioinformatics bioinformatics-analysis bioinformatics-tool multi-omic-integration multi-omics

Last synced: 02 Apr 2026

https://github.com/llrs/uncoupling

Testing RGCCA integration

multi-omics r rstats

Last synced: 08 Apr 2025

https://github.com/kris96tian/multi_omics_integration

Hands-on experience in integrating and analyzing multi-omics data,using advanced bioinformatics tools to derive meaningful insights

multi-omics

Last synced: 05 May 2025

https://github.com/kris96tian/simulator_app_multi_omics

Simulate and download multi-omics datasets, by selecting omics types, sample sizes, and other parameters.

multi-omics multiomics-data omics-data

Last synced: 05 May 2025