Projects in Awesome Lists tagged with anndata
A curated list of projects in awesome lists tagged with anndata .
https://github.com/scverse/scanpy
Single-cell analysis in Python. Scales to >100M cells.
anndata bioinformatics data-science machine-learning python scanpy scverse transcriptomics visualize-data
Last synced: 11 May 2025
https://github.com/scverse/anndata
Annotated data.
anndata bioinformatics data-science machine-learning scanpy scverse transcriptomics
Last synced: 07 Apr 2025
https://github.com/scverse/muon
muon is a multimodal omics Python framework
anndata cite-seq mudata multi-omics multimodal-data multimodal-omics-analysis muon scanpy scatac-seq scrna-seq scverse
Last synced: 13 Apr 2025
https://github.com/scverse/rapids_singlecell
Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.
anndata bioinformatics gpu scverse single-cell
Last synced: 01 May 2025
https://github.com/mvinyard/torch-adata
Create PyTorch Datasets from AnnData
adata anndata python pytorch single-cell
Last synced: 30 Apr 2025
https://github.com/zehua0417/anndata.jl
Anndata for Julia
anndata bioinformatics julia single-cell
Last synced: 10 Apr 2025
https://github.com/mvinyard/gtfast
Lift annotations from a GTF file to an adata object.
anndata gencode genomics gff gtf python single-cell
Last synced: 14 Mar 2025
https://github.com/mvinyard/vintools
Michael Vinyard's utilities
anndata bioinformatics chromatin-accessibility crispr gene-expression genomics google-cloud python single-cell
Last synced: 30 Apr 2025
https://github.com/mvinyard/ann_nmf
AnnData wrapper of the ARD-NMF module from SignatureAnalyzer
Last synced: 14 Mar 2025
https://github.com/mvinyard/annoyance
AnnData-compatible wrapper of Spotify's annoy library.
anndata approximate-nearest-neighbor-search cell-type-classifier python single-cell
Last synced: 14 Mar 2025
https://github.com/mvinyard/anndataquery
Fetch and format data matrices from AnnData
Last synced: 14 Mar 2025
https://github.com/mvinyard/cell-neighbors
Neighbor graphs for single-cell data (AnnData)
anndata neighbor-graphs single-cell
Last synced: 14 Mar 2025
https://github.com/mvinyard/cell-ann
Cell approximate nearest neighbors (ANN)
anndata nearest-neighbors single-cell
Last synced: 14 Mar 2025
https://github.com/mvinyard/cellplots
Plotting assistant and resources
anndata genomics plotting python single-cell
Last synced: 14 Mar 2025