Projects in Awesome Lists by JonnyTran
A curated list of projects in awesome lists by JonnyTran .
https://github.com/jonnytran/openomics
A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
data-integration data-manipulation genomics multi-omics python
Last synced: 16 Mar 2025
https://github.com/JonnyTran/OpenOmics
A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
data-integration data-manipulation genomics multi-omics python
Last synced: 18 Mar 2025
https://github.com/jonnytran/microrna-lung-cancer-associations
An association study to identify a robust miRNA biomarker signature at various stages of lung cancer.
Last synced: 16 Mar 2025
https://github.com/jonnytran/nuclei-segmentation
Getting my hand dirty on nuclei detection and segmentation algorithms on Whole-Slide Pathology Images
Last synced: 16 Mar 2025
https://github.com/jonnytran/multiomicsgraphembedding
A PyTorch-based package for representation learning on heterogeneous networks. It aims to facilitate experimentation on different GNN models, metrics, and datasets from PytorchGeometric, DGL, networkx.
Last synced: 16 Mar 2025
https://github.com/jonnytran/ml-algorithms
Basic machine learning algorithms self-implemented for understanding.
Last synced: 16 Mar 2025
https://github.com/jonnytran/rna2rna_supp_materials
Supplementary materials for PSB submission
graph-embedding link-prediction non-coding-rna
Last synced: 16 Mar 2025
https://github.com/jonnytran/ogb-lsc2
Docker set up for the OGB Large Scale Challenge with graph neural networks
Last synced: 16 Mar 2025
https://github.com/jonnytran/latte
Layer-stacked Attention for Heterogeneous Graph Embedding
graph-neural-networks heterogeneous-graph
Last synced: 16 Mar 2025
https://github.com/jonnytran/latte2go
Protein function prediction by incorporating knowledge graph representation of heterogeneous interactions and Gene Ontology
Last synced: 16 Mar 2025
https://github.com/jonnytran/biccn_mop_miniatlas
https://www.nature.com/articles/s41586-021-03500-8#Sec4
Last synced: 16 Mar 2025
https://github.com/jonnytran/picspot
An Android application simulating a VR experience to help users find a geographic destination.
Last synced: 16 Mar 2025