https://github.com/stellargraph/stellargraph

StellarGraph - Machine Learning on Graphs

data-science deep-learning gcn geometric-deep-learning graph-analysis graph-convolutional-networks graph-data graph-machine-learning graph-neural-networks graphs heterogeneous-networks interpretability link-prediction machine-learning machine-learning-algorithms networkx python saliency-map stellargraph-library

Last synced: 14 May 2025

https://github.com/pykeen/pykeen

🤖 A Python library for learning and evaluating knowledge graph embeddings

cuda deep-learning knowledge-base-completion knowledge-graph-embeddings knowledge-graphs link-prediction machine-learning pykeen python torch

Last synced: 25 Apr 2025

https://github.com/thudm/cogdl

CogDL: A Comprehensive Library for Graph Deep Learning (WWW 2023)

gnn-model graph-classification graph-embedding graph-neural-networks leaderboard link-prediction node-classification pytorch

Last synced: 14 May 2025

https://github.com/THUDM/cogdl

CogDL: A Comprehensive Library for Graph Deep Learning (WWW 2023)

gnn-model graph-classification graph-embedding graph-neural-networks leaderboard link-prediction node-classification pytorch

Last synced: 13 Apr 2025

https://github.com/THUDM/CogDL

CogDL: A Comprehensive Library for Graph Deep Learning (WWW 2023)

gnn-model graph-classification graph-embedding graph-neural-networks leaderboard link-prediction node-classification pytorch

Last synced: 01 May 2025

https://github.com/palash1992/GEM

graph-embedding graph-embeddings link-prediction network-embedding network-visualization

Last synced: 02 May 2025

https://github.com/palash1992/gem

graph-embedding graph-embeddings link-prediction network-embedding network-visualization

Last synced: 08 Apr 2025

https://github.com/zjunlp/promptkg

PromptKG Family: a Gallery of Prompt Learning & KG-related research works, toolkits, and paper-list.

awsome-list demo-tuning dialogue genkgc knowledge-graph knowledge-informed-prompt-learning lambdakg link-prediction natural-language-processing nlp paper paper-list prompt-tuning promptkg pytorch question-answering relation-extraction retrieval-augmented retrievalre retroprompt

Last synced: 13 Jun 2025

https://github.com/zjunlp/PromptKG

PromptKG Family: a Gallery of Prompt Learning & KG-related research works, toolkits, and paper-list.

awsome-list demo-tuning dialogue genkgc knowledge-graph knowledge-informed-prompt-learning lambdakg link-prediction natural-language-processing nlp paper paper-list prompt-tuning promptkg pytorch question-answering relation-extraction retrieval-augmented retrievalre retroprompt

Last synced: 08 May 2025

https://github.com/benedekrozemberczki/datasets

A repository of pretty cool datasets that I collected for network science and machine learning research.

benchmark community-detection data-science dataset deepwalk dimensionality-reduction gcn gnn graph-convolution graph-embedding graph-neural-network graph2vec link-prediction machine-learning network-analysis network-embedding network-science node-classification node-embedding node2vec

Last synced: 13 Feb 2026

https://github.com/Malllabiisc/CompGCN

ICLR 2020: Composition-Based Multi-Relational Graph Convolutional Networks

deep-learning graph-convolutional-networks graph-representation-learning iclr2020 link-prediction pytorch relation-embeddings

Last synced: 21 Jul 2025

https://github.com/typedb/typedb-ml

TypeDB-ML is the Machine Learning integrations library for TypeDB

ai artificial-intelligence geometric-deep-learning grakn graph graph-convolutional-networks graph-networks graphs graql knowledge-graph knowledge-graph-completion knowledgebase link-prediction machine-learning ml neural-network python relational-learning tensorflow

Last synced: 14 Dec 2025

https://github.com/zjunlp/autokg

LLMs for Knowledge Graph Construction and Reasoning: Recent Capabilities and Future Opportunities

chatgpt event-extraction gpt4 information-extraction knowledge-graph knowledge-graph-completion knowledge-graph-construction large-language-models link-prediction relation-extraction relational-triple-extraction

Last synced: 13 Jun 2025

https://github.com/zjukg/NeuralKG

[Tool] For Knowledge Graph Representation Learning

deep-learning knowledge-graph knowledge-graph-completion knowledge-graph-embeddings link-prediction machine-learning neuralkg python pytorch-lightning

Last synced: 09 May 2025

https://github.com/lucashu1/link-prediction

Representation learning for link prediction within social networks

autoencoder graph-algorithms link-prediction networkx node2vec representation-learning social-network

Last synced: 04 Apr 2025

https://github.com/xiangyue9607/BioNEV

Graph Embedding Evaluation / Code and Datasets for "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations" (Bioinformatics 2020)

biomedical-graphs biomedical-networks deepwalk gae graph-embedding graph-embedding-methods graph-embeddings-evaluation graph-factorization line-embedding link-prediction matrix-factorization network-embedding node-classification node2vec sdne struc2vec

Last synced: 01 May 2025

https://github.com/daiquocnguyen/ConvKB

A Novel Embedding Model for Knowledge Base Completion Based on Convolutional Neural Network (NAACL 2018) (Pytorch and Tensorflow)

convolutional-neural-network fb15k237 knowledge-base-completion knowledge-base-embeddings knowledge-graph-completion knowledge-graph-embeddings knowledge-graphs link-prediction pytorch-implementation wn18rr

Last synced: 21 Jul 2025

https://github.com/deepgraphlearning/nbfnet

Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)

graph-neural-networks knowledge-graph link-prediction reasoning

Last synced: 14 Jun 2025

https://github.com/zjunlp/mkgformer

[SIGIR 2022] Hybrid Transformer with Multi-level Fusion for Multimodal Knowledge Graph Completion

dataset former kg kgc knowledge-graph link-prediction mkg mkgformer mnre multimodal ner pytorch relation-extraction sigir2022 transformer

Last synced: 13 Jun 2025

https://github.com/Mehran-k/SimplE

SimplE Embedding for Link Prediction in Knowledge Graphs

knowledge-base knowledge-base-completion knowledge-graph knowledge-graph-completion knowledge-graph-embeddings knowledgebase link-prediction relational-learning starai statistical-relational-learning tensor-factorization tensorflow

Last synced: 29 Apr 2025

https://github.com/thiviyant/torch-rgcn

A PyTorch implementation of the Relational Graph Convolutional Network (RGCN).

graph-convolutional-network graph-neural-network link-prediction node-classification relational-graphs

Last synced: 09 Oct 2025

https://github.com/zjunlp/relphormer

[Neurocomputing 2023] Relational Graph Transformer for Knowledge Graph Representation

fb15k-237 kg knowledge-graph knowledge-graph-completion knowledge-graph-representation link-prediction question-answering recommendation-system relphormer transformer umls wn18rr

Last synced: 13 Jun 2025

https://github.com/nju-websoft/muKG

μKG: A Library for Multi-source Knowledge Graph Embeddings and Applications, ISWC 2022

deep-learning entity-alignment entity-typing link-prediction multi-source-knowledge-graphs pytorch representation-learning

Last synced: 08 May 2025

https://github.com/Dru-Mara/EvalNE

Source code for EvalNE, a Python library for evaluating Network Embedding methods.

benchmark benchmark-framework data-mining evaluation graph-algorithms graph-api graph-embedding graph-representation-learning graphs library link-prediction multilabel-classification network-embedding network-reconstruction networks node-classification python representation-learning research-tool sign-prediction

Last synced: 01 May 2025

https://github.com/xiaohan2012/sdne-keras

Keras implementation of Structural Deep Network Embedding, KDD 2016

autoencoder keras link-prediction network-embedding visualization

Last synced: 02 Apr 2025

https://github.com/jiangnanboy/gnn4lp

gnn for link prediction，图神经网络用于链接预测。

gcn gnn link-prediction pytorch

Last synced: 06 Apr 2026

https://github.com/snap-research/non-contrastive-link-prediction

[ICLR 2023] Link Prediction with Non-Contrastive Learning

deep-learning efficient-training gnn graph-neural-networks link-prediction non-contrastive-learning scalability self-supervised-learning self-supervision

Last synced: 04 Aug 2025

https://github.com/raphaelsty/ckb

Contextual knowledge bases

bert-embeddings freebase knowledge-base knowledge-graph link-prediction rdf wordnet

Last synced: 11 Oct 2025

https://github.com/nyxflower/tip

TIP: Tri-graph Interaction Propagation model for Polypharmacy Side Effect Prediction (GRL@NeurIPS, 2019)

biography deep-learning drug gcn graph-embedding graph-neural-network graph-representation-learning knowledge-graph link-prediction multi-relational nerual-network polypharmacy protein pytorch pytorch-implementation side-effects tensor-factorization

Last synced: 23 Mar 2025

https://github.com/jiangnanboy/gcn_for_prediction_of_protein_interactions

gcn for prediction of protein interactions，图卷积用于蛋白质相互作用。

gae link-prediction protein-interactions pytorch vgae

Last synced: 16 Jan 2026

https://github.com/ysh329/link-prediction

[UNMAINTAINED] 基于PySpark与MySQL的复杂网络链路预测。

link-prediction network pyspark spark

Last synced: 05 May 2025

https://github.com/astrazeneca/ness

Official implementation of "NESS: Node Embeddings from Static Subgraphs"

contrastive-learning graph graph-auto-encoder link-prediction node-embedding self-supervised-learning subgraph

Last synced: 08 May 2025

https://github.com/snap-research/linkless-link-prediction

[ICML 2023] Linkless Link Prediction via Relational Distillation

deep-learning distillation efficient-inference gnn graph-neural-networks knowledge-distillation link-prediction scalability

Last synced: 14 Apr 2025

https://github.com/facebookresearch/forwardgnn

This repository provides code for the paper "Forward Learning of Graph Neural Networks" (ICLR 2024).

forward-learning graph-learning graph-neural-networks link-prediction node-classification

Last synced: 19 Apr 2025

https://github.com/nyxflower/gripnet

GripNet: Graph Information Propagation on Supergraph for Heterogeneous Graphs (PatternRecognit, 2023)

data-integration graph-neural-networks heterogeneous-graph interconnected-graph link-prediction node-classification pytorch

Last synced: 23 Mar 2025

https://github.com/tail-unica/hopwise

hopwise: A Python Library for Explainable Recommendation based on Path Reasoning over Knowledge Graphs, ACM CIKM '25

interpretability-and-explainability knowledge-graph-embeddings link-prediction path-reasoning recommender-systems

Last synced: 14 Jan 2026

https://github.com/FedericoCinus/PROD-ICWSM2022

People Recommender Systems in Opinion Dynamics models

echo-chamber link-prediction opinion-dynamics people-recommenders polarization recommender-systems social-network-analysis

Last synced: 13 Jul 2025

https://github.com/hayesall/ffscraper

Yet another set of scraping tools for FanFiction.Net

fanfiction link-prediction

Last synced: 21 Mar 2025

https://github.com/jayantgoel001/graphsandsocialnetworkanalytics

gephi graphs link-prediction modularity networkx

Last synced: 02 May 2025

https://github.com/kgourgou/machine-learning-zettelkasten

Insert backlinks to markdown documents by using sklearn and cosine similarity.

link-prediction machine-learning markdown notes

Last synced: 11 Sep 2025

https://github.com/kbogas/ddi_blkg

Drug-Drug Interaction Prediction on a Biomedical Literature Knowledge Graph

biomedical drug-drug-interaction knowledge-graph link-prediction reproducible-research

Last synced: 23 Mar 2025

https://github.com/jelhamm/hands-on-graph-neural-networks-using-python

"This repository contains the implementation code for the book, which serves as a practical guide to understanding and applying Graph Neural Networks (GNNs) using Python."

anomaly-detection deep-walk gnn-model graph-attention-networks graph-convolutional-networks graph-generation graph-neural-network graph-theory hands-on-machine-learning heterogeneous-graph jupyter-notebook link-prediction node-representation python recommender-system traffic-forecasting vanilla-neural-network

Last synced: 15 Apr 2026

https://github.com/disi-unibo-nlp/kg-emb-link-pred

[MDPI Electronics - Graph Machine Learning] Comprehensive Analysis of Knowledge Graph Embedding Techniques Benchmarked on Link Prediction

graph-neural-networks knowledge-graph-embeddings knowledge-graph-representation link-prediction pytorch

Last synced: 07 Apr 2026

https://github.com/yao8839836/edge_mae

Friend Ranking in Online Games via Pre-training Edge Transformers. SIGIR 2023

graph link-prediction pre-training social-network transformers

Last synced: 25 Jun 2025

https://github.com/zehong-wang/awesome-foundation-models-on-graphs

A collection of graph foundation models including papers, codes, and datasets.

data-augmentation deep-learning few-shot-learning foundation-models graph-classification graph-foundation-model graph-neural-networks graph-representation-learning knowlege-graph link-prediction machine-learning molecule node-classification node-embedding pre-training representation-learning self-supervised-learning transfer-learning unsupervised-learning zero-shot-learning

Last synced: 17 Apr 2025

https://github.com/aryanahadinia/jwnmf

An unofficial implementation of JWNMF: "A Joint Weighted Nonnegative Matrix Factorization Model via Fusing Attribute Information for Link Prediction"

link-prediction python social-network

Last synced: 21 Jun 2026

https://github.com/noewangjy/paper-citation-prediction

Collaborated work with davidliyutong for course ICE6407P-260-M01 at SJTU

graph-convolutional-networks link-prediction passage-retrieval

Last synced: 19 Mar 2026

https://github.com/timkong21/memgraph-graph-analytics-with-networkx

Graph Analytics delivered by MEMGRAPH academy

analytics breadth-first-search c community-detection depth-first-search ford-fulkerson girvan-newman graph k-means-clustering link-analysis link-prediction louvain-community-detection machine-learning networkx node-classification page-rank pathfinding python

Last synced: 09 May 2026

https://github.com/yao8839836/ogb_report

link-prediction ogb

Last synced: 24 Apr 2025

https://github.com/ralgond/codes-for-caai-bdsc2023-cup-1st-place-solution

CAAI BDSC2023 CUP 任务1《社交图谱小样本场景链接预测》，初复赛第一名的代码，主要思路基于知识图谱

knowledge-graph-completion link-prediction pytorch tianchi tianchi-competition

Last synced: 10 Feb 2026

https://github.com/younesbelkada/altegrad_challenge

Altegrad 2021-2022 - Citation Prediction Challenge - A complete guide and code to crack the citation prediction altegrad challenge - https://www.kaggle.com/c/altegrad-2021/ - MVA Masters program 2021-2022

article deep-learning feature-extraction graph-neural-networks huggingface-transformers keybert link-prediction sentence-transformers

Last synced: 02 Apr 2025

https://github.com/snap-research/nodedup

Node Duplication Improves Cold-start Link Prediction

cold-start data-augmentation data-augmentation-strategies gnn gnns graph graphml link-prediction ml recommendation-system recommender-system

Last synced: 21 Jul 2025

https://github.com/cpu-ds/unike

基于 OpenKE-PyTorch 开发的知识图谱嵌入工具包，支持跨平台运行，具备自动超参数搜索、高效并行训练以及实验结果记录功能，为研究与应用提供强大助力。

knowledge-graph knowledge-graph-completion knowledge-graph-embeddings link-prediction python torch

Last synced: 04 Jul 2025

https://github.com/loubnabnl/link-prediction-in-citation-graphs

Link prediction in a Citation Network using text and graph-based features. This work is part of the ALTEGRAD course in the MVA master.

deep-learning embeddings-word2vec graph-neural-networks graphs link-prediction sentence-transformers

Last synced: 04 Jul 2025

https://github.com/aida-ugent/nrl4lp

Instructions for replicating the experiments in the paper "Benchmarking Network Embedding Models for Link Prediction: Are We Making Progress?" (DSAA2020)

benchmark evaluation link-prediction network-embedding representation-learning

Last synced: 30 Aug 2025

https://github.com/simonepri/edgelist-mapper

📊Maps nodes and edges of a multi-relational graph to integer

converter dataset edgelist kb kg knowledge-graph link-prediction machine-learning map relation-prediction

Last synced: 23 Feb 2026

https://github.com/lucasmccabe/covid19-link-prediction

Geodesic and Neural Features for Link Prediction in the COVID-19 Biomedical Knowledge Graph

graph-algorithms link-prediction machine-learning network-analysis

Last synced: 05 May 2026

https://github.com/panastasiadis/link-prediction-with-spark

This Maven Java project implements three common measures for link prediction in graphs: Common Neighbors, Jaccard Coefficient, and Adamic-Adar. The project leverages the power of Apache Spark to efficiently process large graphs in a distributed environment.

adamic-adar bigdata common-neighbors dataengineering datascience jaccard-coefficient javadevelopment link-prediction machinelearning maven spark

Last synced: 03 May 2026

https://github.com/aida-ugent/fipr

The KL-Divergence between a Graph Model and its Fair I-Projection as a Fairness Regularizer (ECML-PKDD 2021).

fairness graphs link-prediction projection

Last synced: 06 Jul 2026

https://github.com/aida-ugent/maxentcomb

Source code for the paper "Block-Approximated Exponential Random Graphs" (DSAA2020)

ergm link-prediction maxent modelling network network-reconstruction

Last synced: 15 Mar 2025

https://github.com/ybakhan/neuro-symbolic-link-prediction

Neuro-symbolic link prediction on the Twitch social network. MLP with symbolic loss penalty from preferential attachment theory.

graph-neural-networks link-prediction machine-learning neuro-symbolic-ai pytorch social-network-analysis

Last synced: 23 Jun 2026

https://github.com/ghnmqdtg/link-prediction-on-node-pairs

A project to predict the link between node pairs.

link-prediction network-analysis

Last synced: 04 Apr 2025

https://github.com/jonnytran/rna2rna_supp_materials

Supplementary materials for PSB submission

graph-embedding link-prediction non-coding-rna

Last synced: 02 Jan 2026

https://github.com/mamin78/friend-suggestion-on_facebook

A graph-based model that suggests new people as your friends on Facebook!

friend-suggestion graph link link-prediction social-media social-network social-network-analysis social-networks

Last synced: 13 Jun 2026

https://github.com/radlab-dev-group/relgat-projector

A hybrid Relational-GAT with a projection head that learns relation operators to transform embeddings, impute unseen node vectors, and expand search queries via relational paths.

link-prediction llm projection relation-learning

Last synced: 11 Feb 2026

https://github.com/bkj/spucker

Sparse TuckER

link-prediction pytorch tensor-decomposition

Last synced: 15 Jun 2025

https://github.com/kanhaiya-gupta/gnn-research-platform

A comprehensive research platform for Graph Neural Networks (GNNs) featuring 10+ applications including node and graph classification, link prediction, community detection, anomaly detection, and dynamic graph modelling, all with an interactive web interface.

anomaly-detection community-detection deep-learning dynamic-graphs edge-classification fastapi gnn graph-classification graph-embedding graph-generation graph-learning graph-neural-networks graph-regression graph-visualization link-prediction machine-learning network-analysis node-classification relational-graphs research-platform

Last synced: 29 Jul 2026

https://github.com/breandan/tracelink

🔗 Trace Link Prediction from code to documentation

documentation link-prediction reccomender traceability

Last synced: 04 Jan 2026