Projects in Awesome Lists by DeepGraphLearning
A curated list of projects in awesome lists by DeepGraphLearning .
https://github.com/deepgraphlearning/literaturedl4graph
A comprehensive collection of recent papers on graph deep learning
arxiv deep-learning machine-learning papers
Last synced: 14 Jun 2025
https://github.com/DeepGraphLearning/LiteratureDL4Graph
A comprehensive collection of recent papers on graph deep learning
arxiv deep-learning machine-learning papers
Last synced: 14 Mar 2025
https://github.com/deepgraphlearning/torchdrug
A powerful and flexible machine learning platform for drug discovery
deep-learning drug-discovery graph-neural-networks pytorch
Last synced: 15 May 2025
https://github.com/DeepGraphLearning/torchdrug
A powerful and flexible machine learning platform for drug discovery
deep-learning drug-discovery graph-neural-networks pytorch
Last synced: 01 May 2025
https://github.com/DeepGraphLearning/graphvite
GraphVite: A General and High-performance Graph Embedding System
cuda data-visualization gpu knowledge-graph machine-learning network-embedding representation-learning
Last synced: 13 Apr 2025
https://github.com/deepgraphlearning/graphvite
GraphVite: A General and High-performance Graph Embedding System
cuda data-visualization gpu knowledge-graph machine-learning network-embedding representation-learning
Last synced: 16 May 2025
https://github.com/deepgraphlearning/ultra
A foundation model for knowledge graph reasoning
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/gearnet
GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
graph-neural-networks pre-training protein-representation-learning
Last synced: 14 Jun 2025
https://github.com/DeepGraphLearning/GearNet
GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
graph-neural-networks pre-training protein-representation-learning
Last synced: 09 May 2025
https://github.com/deepgraphlearning/nbfnet
Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)
graph-neural-networks knowledge-graph link-prediction reasoning
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/confgf
Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).
Last synced: 14 Jun 2025
https://github.com/DeepGraphLearning/ConfGF
Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).
Last synced: 09 May 2025
https://github.com/deepgraphlearning/astarnet
Official implementation of A* Networks
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/graphany
GraphAny: Fully-inductive Node Classification on Arbitrary Graphs
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/protst
[ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/gnn-qe
Official implementation of Graph Neural Network Query Executor (ICML 2022)
fuzzy-logic graph-neural-networks knowledge-graph reasoning
Last synced: 14 Jun 2025
https://github.com/DeepGraphLearning/GNN-QE
Official implementation of Graph Neural Network Query Executor (ICML 2022)
fuzzy-logic graph-neural-networks knowledge-graph reasoning
Last synced: 12 Apr 2025
https://github.com/deepgraphlearning/peer_benchmark
PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/diffpack
Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
deep-learning diffusion-models molecule protein-structure score-based-generative-modeling score-matching
Last synced: 08 Feb 2025
https://github.com/deepgraphlearning/esm-gearnet
ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/graphlog
Implementation of Self-supervised Graph-level Representation Learning with Local and Global Structure (ICML 2021).
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/gearbind
Pretrainable geometric graph neural network for antibody affinity maturation
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/inductiveqe
Official implementation of Inductive Logical Query Answering in Knowledge Graphs (NeurIPS 2022)
Last synced: 14 Jun 2025
https://github.com/DeepGraphLearning/InductiveQE
Official implementation of Inductive Logical Query Answering in Knowledge Graphs (NeurIPS 2022)
Last synced: 12 Apr 2025
https://github.com/deepgraphlearning/siamdiff
Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
pre-training protein protein-protein-interaction protein-representation-learning
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/esm-s
Structure-Informed Protein Language Model
protein protein-structure torchdrug
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/s3f
Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/sccello
[NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/drugtutorial_aaai2021
Tutorial for Drug Discovery on AAAI 2021.
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/proteintutorial_aaai2025
https://deepgraphlearning.github.io/ProteinTutorial_AAAI2025/
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/ultra_torchdrug
A TorchDrug version of ULTRA for reproducibility
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/graphrepresentationliterature
The literature on graph representation learning
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/aaai19tutorial
Tutorial "graph representation learning" given at AAAI'19
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/torchprotein-site
Website for TorchProtein
Last synced: 14 Jun 2025
https://github.com/deepgraphlearning/coursewebsite
Course website for Deep Learning and Applications
Last synced: 14 Jun 2025