Projects in Awesome Lists tagged with protein-representation-learning
A curated list of projects in awesome lists tagged with protein-representation-learning .
https://github.com/tbepler/protein-sequence-embedding-iclr2019
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
deep-learning language-model protein-embedding protein-modeling protein-representation-learning protein-sequence protein-structure pytorch recurrent-neural-networks
Last synced: 10 Apr 2025
https://github.com/DeepGraphLearning/GearNet
GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
graph-neural-networks pre-training protein-representation-learning
Last synced: 09 May 2025
https://github.com/lirongwu/mape-ppi
Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"
codebook masked-modeling microenvironment ppi-networks protein-embedding protein-protein-interaction protein-representation-learning vocabulary
Last synced: 07 Apr 2025
https://github.com/borgwardtlab/pst
Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
evolutionary-scale-modeling graph-transformer protein-representation-learning protein-structure
Last synced: 21 Nov 2024
https://github.com/lirongwu/psc-cpi
Code for AAAI 2024 paper "PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction"
compound-protein-interaction contrastive-learning protein-modeling protein-representation-learning
Last synced: 13 Apr 2025