Projects in Awesome Lists tagged with ppi-networks
A curated list of projects in awesome lists tagged with ppi-networks .
https://github.com/a-r-j/graphein
Protein Graph Library
bioinformatics computational-biology deep-learning dgl drug-discovery gene-regulatory-networks geometric-deep-learning graph-neural-networks interactome interactomics ppi-networks protein protein-data-bank protein-design protein-structure python pytorch pytorch-geometric rna structural-biology
Last synced: 14 May 2025
https://github.com/lirongwu/mape-ppi
Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"
codebook masked-modeling microenvironment ppi-networks protein-embedding protein-protein-interaction protein-representation-learning vocabulary
Last synced: 07 Apr 2025
https://github.com/chao1224/sgnn-ebm
Structured Multi-task Learning for Molecular Property Prediction, AISTATS'22 (https://proceedings.mlr.press/v151/liu22e.html)
chembl chembl-string energy-based-model knowledge-graph molecule multitask-learning ppi-networks string
Last synced: 18 Mar 2025
https://github.com/THinnerichs/DTI-VOODOO
A PPI network driven approach to drug-target-interaction prediction using deep graph learning methods.
dti-prediction graph-neural-networks ontologies ppi-networks
Last synced: 28 Nov 2024
https://github.com/sevmardi/protein-protein-networks
Evaluate a strategy for predicting cancer-related proteins in PPI networks.
ppi ppi-networks prediction python-3
Last synced: 19 Apr 2025
https://github.com/darwinsorchid/biological-networks
[R] Generating Protein-Protein Interaction Networks using R and Quarto publishing system in HTML format.
html-css networks-biology ppi-networks quarto
Last synced: 19 Feb 2025
