Projects in Awesome Lists tagged with gene-regulatory-networks
A curated list of projects in awesome lists tagged with gene-regulatory-networks .
https://github.com/a-r-j/graphein
Protein Graph Library
bioinformatics computational-biology deep-learning dgl drug-discovery gene-regulatory-networks geometric-deep-learning graph-neural-networks interactome interactomics ppi-networks protein protein-data-bank protein-design protein-structure python pytorch pytorch-geometric rna structural-biology
Last synced: 14 May 2025
https://github.com/jbris/nextflow-graph-machine-learning
A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.
deep-learning docker docker-compose dream5 gene-regulatory-network gene-regulatory-network-inference gene-regulatory-networks graph-neural-network graph-neural-networks graphsage machine-learning minio mlflow mlops nextflow nextflow-pipeline nextflow-pipelines variational-autoencoder variational-inference
Last synced: 04 May 2025
https://github.com/nyxflower/drugdiscovery
An explainable inductive learning model on gene regulatory and toxicogenomic knowledge graph (under development...)
drug-design drug-discovery drug-repurposing explainable-ml gene-regulatory-networks gnn heterogeneous-graph inductive-learning knowledge-graph molecular-mechanics new-dataset predictive-models systems-biology
Last synced: 22 Feb 2025
https://github.com/amlalejini/alife-2020--signalgp-genetic-regulation
Supplemental material associated with ALife 2020 conference submission.
artificial-gene-regulatory-networks artificial-life evolutionary-computation gene-regulatory-networks genetic-programming signalgp
Last synced: 04 Mar 2025
