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Projects in Awesome Lists tagged with nextflow-pipeline
A curated list of projects in awesome lists tagged with nextflow-pipeline .
https://github.com/midnighter/nextflow-gotchas
A collection of unexpected challenges and learnings with nextflow and nf-core.
gotcha nextflow nextflow-pipeline nextflow-process nextflow-workflow nf-core
Last synced: 09 Nov 2024
https://github.com/biosustain/dsp_nf-metagenomics
Shotgun metagenomics pipeline to process microbiome samples
metagenomics nextflow-pipeline
Last synced: 15 Nov 2024
https://github.com/nschan/nf-genomeassembly
Nextflow pipeline to assemble genomes from long reads.
annotation arabidopsis arabidopsis-thaliana genome genome-assembly genome-sequencing hifi long-read-sequencing long-reads nanopore nextflow nextflow-pipeline nextflow-pipelines oxford-nanopore pacbio pacbio-hifi-sequencing-reads scaffolding
Last synced: 06 Nov 2024
https://github.com/jbris/nextflow-graph-machine-learning
A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.
deep-learning docker docker-compose dream5 gene-regulatory-network gene-regulatory-network-inference gene-regulatory-networks graph-neural-network graph-neural-networks graphsage machine-learning minio mlflow mlops nextflow nextflow-pipeline nextflow-pipelines variational-autoencoder variational-inference
Last synced: 13 Nov 2024
https://github.com/jbris/nextflow-tutorials
Working through NextFlow tutorials. See https://github.com/nextflow-io/training
dag directed-acyclic-graph docker groovy groovy-language nextflow nextflow-dsl2 nextflow-lang nextflow-language nextflow-pipeline nextflow-pipelines nextflow-process nextflow-training nextflow-tutorial nextflow-tutorials nextflow-workflow pipeline pipelines workflow workflows
Last synced: 13 Nov 2024
https://github.com/gauravcodepro/nextflow-pacbiohifi
a nextflow pacbiohifi for the genome assembly from the pacbiohifi
bioinformatics nextflow nextflow-language nextflow-pipeline nextflow-process pacbio-data pacbiohifi
Last synced: 09 Nov 2024
https://github.com/sydney-informatics-hub/template-nf
A straightforward Nextflow workflow template generator.
bioinformatics dsl2 genomics nextflow nextflow-pipeline pipeline template workflow
Last synced: 21 Nov 2024
https://github.com/midnighter/metanetx-nf
A Nextflow pipeline for extracting, transforming, augmenting, and loading the MetaNetX contents into a SQL database.
metanetx nextflow nextflow-pipeline
Last synced: 09 Nov 2024
https://github.com/biosustain/dsp_nf-msdap
Nextflow pipeline for MS-DAP, a downstream pipeline to generate statistical reports for MS data
downstream-analysis nextflow-pipeline proteomics
Last synced: 15 Nov 2024
https://github.com/cometsong/flow_flash_assembler
Paired Sequence Assembler using Flowcraft/Nextflow/Deploit
flowcraft nextflow nextflow-pipeline sequence-assembler
Last synced: 20 Nov 2024
https://github.com/plantinformatics/shortbread2
Shortbread2 is a bioinformatics pipeline for identifying single nucleotide polymorphisms (SNPs) and insertions/deletions (indels) from High-Throughput Next Generation Sequencing (NGS) data.
bioinformatics gatk nextflow-pipeline ngs-pipeline wgs
Last synced: 08 Nov 2024
