Projects in Awesome Lists by plantinformatics
A curated list of projects in awesome lists by plantinformatics .
https://github.com/plantinformatics/pretzel
Javascript full-stack framework for Big Data visualisation and analysis
big-data bioinformatics data-science data-visualization ember emberjs express expressjs javascript open-source
Last synced: 10 Apr 2025
https://github.com/plantinformatics/shortbread2
Shortbread2 is a bioinformatics pipeline for identifying single nucleotide polymorphisms (SNPs) and insertions/deletions (indels) from High-Throughput Next Generation Sequencing (NGS) data.
bioinformatics gatk nextflow-pipeline ngs-pipeline wgs
Last synced: 21 Feb 2025
https://github.com/plantinformatics/pretzel-wheat-agronomic-genes
Curated list of agronomic genes of interest in wheat
Last synced: 21 Feb 2025
https://github.com/plantinformatics/pretzel-user-guide-old
Pretzel User Guide
Last synced: 12 Mar 2025
https://github.com/plantinformatics/brioche
Brioche is a bioinformatics pipeline for mapping markers to a given reference genome. brioche uses Nextflow, a domain-specific language (DSL) for defining workflows, as its workflow management tool. Brioche streamlines marker mapping to reference genomes through a Nextflow-powered pipeline.
agg bioinformatics brioche genebank genomics mapping-tools markers nextflow
Last synced: 12 Mar 2025
https://github.com/plantinformatics/interval-bins
binEvenLengthRound() : Calculate the bin size for even-sized bins to span the given interval. binBoundaries() : Generate an array of even-sized bins to span the given interval.
Last synced: 21 Feb 2025
https://github.com/plantinformatics/pretzel-user-guide
User guide for Pretzel
Last synced: 21 Feb 2025
https://github.com/plantinformatics/genolink
Genolink is a middleware for integrating genotype databases and Genesys, reducing data redundancy, and enabling real-time data access and filtering across genomic platforms.
Last synced: 21 Feb 2025
https://github.com/plantinformatics/pretzel-application-note
A repository for an application note about pretzel
Last synced: 21 Feb 2025
https://github.com/plantinformatics/child-process-progressive
Wrap node child_process, implementing a progressive option for multiple data chunks sent via SSE.
Last synced: 21 Feb 2025
https://github.com/plantinformatics/agg-priority-traits
Data from the AGG's November 2023 Community of Practice meeting
Last synced: 21 Feb 2025
https://github.com/plantinformatics/vcf-genotype-brapi
Client and server functions to access genotype data from VCF via a custom web API and BrAPI
Last synced: 21 Feb 2025
https://github.com/plantinformatics/avrig-wheatbarley-40k
Datasets related to the Infinium Wheat Barley 40K SNP chip co-developed by Agriculture Victoria and InterGrain
Last synced: 21 Feb 2025
https://github.com/plantinformatics/pretzel-data
Data structure for https://github.com/plantinformatics/pretzel
Last synced: 21 Feb 2025
https://github.com/plantinformatics/pretzel-static-pages
Static HTML Content for the landing page of the Pretzel project instance
Last synced: 21 Feb 2025
https://github.com/plantinformatics/durum_iselect_90ksnp_genotypecalling
Perl script for generating genotype calls for unrelated durum wheat samples assayed using the Illumina iSelect 90K SNP bead chip array
Last synced: 21 Feb 2025