Ecosyste.ms: Awesome

https://github.com/solida-core/solida

SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.

ansible ngs ngs-pipeline pipeline python reproducibility snakemake workflow yaml

Last synced: 20 Oct 2024

https://github.com/laminetourelab/drug-discovery

I am working on the discovery of new potential therapeutic tagets using Machine learning on multi-omics data.

autoencoder-classification deep-learning drug-discovery graph-convolutional-networks longitudinal-data machine-learning multimodal-data neural-network ngs-pipeline pytorch regularization-methods target

Last synced: 08 Nov 2024

https://github.com/solida-core/dima

Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.

bioinformatics genomics ngs-pipeline snakemake snakemake-workflows workflows

Last synced: 07 Nov 2024

https://github.com/pveber/te-insertion-detector

bioinformatics ngs-pipeline

Last synced: 09 Nov 2024

https://github.com/czheluo/polymap

Pipeline for polymap and QTL Mapping

genetic-mapping ngs-pipeline qtl-mapping

Last synced: 18 Nov 2024

https://github.com/plantinformatics/shortbread2

Shortbread2 is a bioinformatics pipeline for identifying single nucleotide polymorphisms (SNPs) and insertions/deletions (indels) from High-Throughput Next Generation Sequencing (NGS) data.

bioinformatics gatk nextflow-pipeline ngs-pipeline wgs

Last synced: 08 Nov 2024