Projects in Awesome Lists tagged with snakemake-workflows
A curated list of projects in awesome lists tagged with snakemake-workflows .
https://github.com/clinical-genomics/balsamic
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
bioinformatics genomics snakemake-workflows somatic-mutations variant-calling
Last synced: 15 Aug 2025
https://github.com/signaturescience/metscale
MetScale: snakemake workflows to scale metagenome analyses
metagenomics open-source snakemake-workflows taxonomic-classifications
Last synced: 16 Jan 2026
https://github.com/dohlee/snakemake-wrappers
:snake: Snakemake wrappers for bioinformatics.
bioinformatics bioinformatics-analysis reproducible-research snakemake snakemake-workflows snakemake-wrappers wrapper
Last synced: 29 Apr 2025
https://github.com/hpc-carpentry/old-hpc-workflows
Scaling studies on high-performance clusters using Snakemake workflows
alpha carpentries-incubator english hpc-carpentry parallel-computing snakemake-workflows
Last synced: 27 Mar 2025
https://github.com/sk-sahu/snakeflows
Collective Snakemake workflows for easy and reproducible NGS data analysis.
rna-seq-analysis snakemake-workflows
Last synced: 14 Apr 2025
https://github.com/dohlee/snakemake-gatk
:snake::wrench: Snakemake wrappers for GATK.
bioinformatics-analysis bioinformatics-pipeline gatk reproducible-research snakemake snakemake-workflows
Last synced: 28 Feb 2026
https://github.com/clavellab/genome-assembly
A Snakemake workflow assembling bacterial genomes according to the standard operating procedure in the Clavel Lab
bacterial-genomes genome-assembly snakemake snakemake-workflows
Last synced: 12 May 2026
https://github.com/crazyhottommy/pyflow-chromforest
snakemake workflow for random forest based feature selection on chromHMM data
chromhmm epigenomics machine-learning snakemake-workflows
Last synced: 06 May 2025
https://github.com/lumc/hutspot
Multisample DNAseq variant calling pipeline for use in diagnostics
biocontainers bioinformatics ngs-analysis ngs-pipeline singularity snakemake snakemake-workflows
Last synced: 26 Jul 2025
https://github.com/cbg-ethz/scdna-pipe
Python data analysis pipeline for single cell copy number event history reconstruction
bioinformatics bioinformatics-pipeline data-analysis genomics python snakemake snakemake-workflows workflow
Last synced: 05 Jan 2026
https://github.com/mwort/snakemake_grass
Snakemake - GRASS interface
grass-gis reproducible-research snakemake-workflows
Last synced: 16 Jan 2026
https://github.com/stracquadaniolab/workflow-pygna
A simple Snakemake workflow to perform network analyses using the Python Geneset Network Analysis (PyGNA) package.
pipeline snakemake snakemake-workflows
Last synced: 03 Mar 2026
https://github.com/vsoch/encode-demo-workflow
The ENCODE-DCC demo workflow in Snakemake (under development)
encode-dcc snakemake snakemake-workflows
Last synced: 15 Oct 2025
https://github.com/sachintha-samarathunga/sachintha-samarathunga
My Readme Profile
awards beautiful github-stats most-used-languages profile-views skills snakemake-workflows stickers style
Last synced: 10 Apr 2025
https://github.com/solida-core/dima
Snakemake pipeline to map DNA datasets to a given reference genome using BWA MEM and Samtools.
bioinformatics genomics ngs-pipeline snakemake snakemake-workflows workflows
Last synced: 16 Feb 2026
https://github.com/cnuahs/snakemake-minimal
A minimal Snakemake pipeline.
snakemake snakemake-pipeline snakemake-pipelines snakemake-workflow snakemake-workflows
Last synced: 27 Jun 2025
https://github.com/stolarczyk/saarpipeline
Origin mechanisms of SAARs – use case of L-SAARs in signal peptides among higher Eukaryotes
evolution l-saars low-complexity-regions perl signal-peptides snakemake-workflows
Last synced: 18 May 2026
https://github.com/cpauvert/plnnetwork-workflow
Infer network from count data within Snakemake using a sparse Poisson lognormal model (PLNnetwork)
count-data microbiome-analysis network-inference snakemake snakemake-workflows
Last synced: 11 Oct 2025
