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Projects in Awesome Lists tagged with variant-calling
A curated list of projects in awesome lists tagged with variant-calling .
https://github.com/tanghaibao/jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
allmaps assembly bioinformatics blast comparative-genomics genetic-maps genome-sequencing genomics sequence-alignments synteny variant-calling
Last synced: 29 Sep 2024
https://github.com/vcflib/vcflib
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
genomics genotyping haplotypecaller variant-calling vcf-manipulation
Last synced: 30 Jul 2024
https://github.com/luntergroup/octopus
Bayesian haplotype-based mutation calling
bioinformatics de-novo-mutation genomics haplotypes phasing single-cell somatic-variants variant-calling variants
Last synced: 02 Aug 2024
https://github.com/suhrig/arriba
Fast and accurate gene fusion detection from RNA-Seq data
cancer fusion-gene fusion-genes gene-fusion gene-fusions rna-seq star structural-variation variant-calling virus-integration
Last synced: 08 Aug 2024
https://github.com/Illumina/paragraph
Graph realignment tools for structural variants
genotyping htslib structural-variation variant-calling vcf
Last synced: 03 Aug 2024
https://github.com/mcveanlab/mccortex
De novo genome assembly and multisample variant calling
contigs cortex de-bruijn-graphs genome-analysis genome-assembly genome-graph genomics kmer variant-calling
Last synced: 08 Aug 2024
https://github.com/lh3/fermikit
De novo assembly based variant calling pipeline for Illumina short reads
bioinformatics denovo-assembly genomics variant-calling
Last synced: 03 Aug 2024
https://github.com/pdimens/harpy
Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
bioinformatics haplotype linked-reads pipeline sequencing variant-calling
Last synced: 30 Jul 2024
https://github.com/carpentries-israel/2024-10-29-wis-new
Data Carpentry Genomics @ Weizmann Institute, October 29-31, 2024
bash bioinformatics bioinformatics-workshop carpentries data-carpentry genomics genomics-workshop r variant-calling
Last synced: 29 Sep 2024
https://github.com/carpentries-israel/2024-10-29-wis
Data Carpentry Genomics @ Weizmann Institute, October 29-31, 2024
bash bioinformatics bioinformatics-workshop carpentries data-carpentry genomics genomics-workshop r variant-calling
Last synced: 26 Sep 2024