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Projects in Awesome Lists tagged with variant-calling

A curated list of projects in awesome lists tagged with variant-calling .

https://github.com/tanghaibao/jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

allmaps assembly bioinformatics blast comparative-genomics genetic-maps genome-sequencing genomics sequence-alignments synteny variant-calling

Last synced: 29 Sep 2024

https://github.com/vcflib/vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

genomics genotyping haplotypecaller variant-calling vcf-manipulation

Last synced: 30 Jul 2024

https://github.com/Illumina/paragraph

Graph realignment tools for structural variants

genotyping htslib structural-variation variant-calling vcf

Last synced: 03 Aug 2024

https://github.com/mcveanlab/mccortex

De novo genome assembly and multisample variant calling

contigs cortex de-bruijn-graphs genome-analysis genome-assembly genome-graph genomics kmer variant-calling

Last synced: 08 Aug 2024

https://github.com/lh3/fermikit

De novo assembly based variant calling pipeline for Illumina short reads

bioinformatics denovo-assembly genomics variant-calling

Last synced: 03 Aug 2024

https://github.com/pdimens/harpy

Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.

bioinformatics haplotype linked-reads pipeline sequencing variant-calling

Last synced: 30 Jul 2024