Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists tagged with basecalling
A curated list of projects in awesome lists tagged with basecalling .
https://github.com/nanoporetech/dorado
Oxford Nanopore's Basecaller
basecalling genomics libtorch nanopore
Last synced: 02 Aug 2024
https://github.com/nanoporetech/bonito
A PyTorch Basecaller for Oxford Nanopore Reads
Last synced: 02 Aug 2024
https://github.com/sirselim/guppy_parameter_optimiser
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
basecalling gpu guppy nanopore-sequencing optimisation
Last synced: 18 Oct 2024
https://github.com/mbhall88/thesis
My PhD thesis
bacterial-genomes basecalling bioinformatics drug-resistance-prediction genome-graphs nanopore-sequencing phd-thesis transmission-clustering tuberculosis
Last synced: 13 Oct 2024
https://github.com/mbhall88/tubby-manuscript
Manuscript for our work training and evaluating a Mycobacterium tuberculosis-specific Nanopore basecalling model
basecalling bioinformatics genomics mycobacterium-tuberculosis nanopore
Last synced: 13 Oct 2024