Projects in Awesome Lists tagged with basecalling
A curated list of projects in awesome lists tagged with basecalling .
https://github.com/nanoporetech/dorado
Oxford Nanopore's Basecaller
basecalling genomics libtorch nanopore
Last synced: 15 May 2025
https://github.com/nanoporetech/bonito
A PyTorch Basecaller for Oxford Nanopore Reads
Last synced: 20 Feb 2026
https://github.com/nanoporetech/megalodon
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
basecalling epigenetics guppy variant-calling
Last synced: 29 Mar 2025
https://github.com/nanoporetech/remora
Methylation/modified base calling separated from basecalling.
basecalling methylation nanopore
Last synced: 06 Apr 2025
https://github.com/nanoporetech/rerio
Research release basecalling models and configurations
Last synced: 05 Sep 2025
https://github.com/sirselim/guppy_parameter_optimiser
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
basecalling gpu guppy nanopore-sequencing optimisation
Last synced: 08 Oct 2025
https://github.com/mbhall88/thesis
My PhD thesis
bacterial-genomes basecalling bioinformatics drug-resistance-prediction genome-graphs nanopore-sequencing phd-thesis transmission-clustering tuberculosis
Last synced: 13 Oct 2025
https://github.com/shubhamchandak94/lossy_compression_evaluation
Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy
assembly basecalling consensus-algorithm lossy-compression methylation-analysis nanopore-analysis-pipeline nanopore-sequencing
Last synced: 15 Apr 2026
https://github.com/angelovangel/nxf-alignment
Nextflow pipeline to process ONT adaptive sampling runs (basecalling, mapping, statistics)
basecalling nanopore nextflow-pipeline sequencing
Last synced: 27 Feb 2026
