Projects in Awesome Lists tagged with basecalling
A curated list of projects in awesome lists tagged with basecalling .
https://github.com/nanoporetech/dorado
Oxford Nanopore's Basecaller
basecalling genomics libtorch nanopore
Last synced: 15 May 2025
https://github.com/nanoporetech/bonito
A PyTorch Basecaller for Oxford Nanopore Reads
Last synced: 14 May 2025
https://github.com/nanoporetech/megalodon
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
basecalling epigenetics guppy variant-calling
Last synced: 29 Mar 2025
https://github.com/nanoporetech/remora
Methylation/modified base calling separated from basecalling.
basecalling methylation nanopore
Last synced: 06 Apr 2025
https://github.com/nanoporetech/rerio
Research release basecalling models and configurations
Last synced: 13 Apr 2025
https://github.com/sirselim/guppy_parameter_optimiser
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
basecalling gpu guppy nanopore-sequencing optimisation
Last synced: 19 Apr 2025
https://github.com/mbhall88/thesis
My PhD thesis
bacterial-genomes basecalling bioinformatics drug-resistance-prediction genome-graphs nanopore-sequencing phd-thesis transmission-clustering tuberculosis
Last synced: 11 Apr 2025
https://github.com/mbhall88/tubby-manuscript
Manuscript for our work training and evaluating a Mycobacterium tuberculosis-specific Nanopore basecalling model
basecalling bioinformatics genomics mycobacterium-tuberculosis nanopore
Last synced: 18 Mar 2025