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Projects in Awesome Lists tagged with nanopore-sequencing

A curated list of projects in awesome lists tagged with nanopore-sequencing .

https://github.com/bcgsc/NanoSim

Nanopore sequence read simulator

genome nanopore-sequencing oxford-nanopore simulator transcriptome

Last synced: 02 Aug 2024

https://github.com/GoekeLab/xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

genomics machine-learning modification nanopore nanopore-sequencing python rna rna-modifications rna-seq transcriptomics

Last synced: 02 Aug 2024

https://github.com/GoekeLab/bambu

Reference-guided transcript discovery and quantification for long read RNA-Seq data

bambu bioconductor long-reads nanopore nanopore-sequencing r rna-seq rna-seq-analysis transcript-quantification transcript-reconstruction transcriptomics

Last synced: 02 Aug 2024

https://github.com/bioinfomaticsCSU/deepsignal

Detecting methylation using signal-level features from Nanopore sequencing reads

bioinformatics epigenetics methylation nanopore-sequencing tensorflow

Last synced: 02 Aug 2024

https://github.com/bcgsc/arcs

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

10xgenomics assembler bioinformatics c-plus-plus genome graph nanopore-sequencing oxford-nanopore pacbio-data scaffold science

Last synced: 29 Sep 2024

https://github.com/bcgsc/RNA-Bloom

:hibiscus: reference-free transcriptome assembly for short and long reads

bioinformatics-tool bulk-rna-seq denovo-assembly nanopore-sequencing pacbio-sequencing rna-seq single-cell-rna-seq

Last synced: 02 Aug 2024