Projects in Awesome Lists tagged with pacbio-data
A curated list of projects in awesome lists tagged with pacbio-data .
https://github.com/bcgsc/arcs
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
10xgenomics assembler bioinformatics c-plus-plus genome graph nanopore-sequencing oxford-nanopore pacbio-data scaffold science
Last synced: 02 Mar 2026
https://github.com/deepomicslab/SpecHLA
SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
allelic-imbalance cancer genotype-frequency haplotype hla-sequence hla-typing human-leukocyte-antigens immunity local-assembly loh loss-of-heterozygosity nanopore pacbio-data phase reads-binning
Last synced: 14 Mar 2025
https://github.com/ibchgenomic/panscape
reads to genome, pangenome graphs, summarize and analyze
bioinformatics nanopore-reads nanopore-sequencing pacbio-data pacbio-sequencing
Last synced: 30 Apr 2025
https://github.com/xapple/pacmill
The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data and produce PDF reports detailing taxonomical assignments along with other statistics.
16s-rrna bioinformatics-pipeline dna-sequences pacbio-data pdf-reports
Last synced: 22 May 2026
https://github.com/sciencegenome/pacbiohifi-desktop
a streamlit application for graphical analyisis of pacbiohifi reads
bioinformatics bioinformatics-analysis genome-analysis pacbio pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi sequencing-analysis sequencing-data
Last synced: 18 Mar 2025
https://github.com/ibchgenomic/pacbio-polyatgc-remove
polyATGC pacbio/oxford nanopore estimator
bioinformatics genome-analysis genome-annotation pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi
Last synced: 18 Mar 2025
https://github.com/ibchgenomic/genomeassembly-pacbiohifi
pacbioHifi genome assembly benchmarks
bioinformatics bioinformatics-data genome-alignment genome-analysis genome-assembly genome-sequencing pacbio-data pacbio-sequencing
Last synced: 18 Mar 2025
https://github.com/gauravcodepro/bcftools-filter
making bcftools filtering easy. bcftools_filter which will allow for the faster filtering of the variant calls according to the allelic depth and the tags using simple to overlap approaches as compare to implementing the regular patterns.
bioinformatics-algorithms oxford-nanopore pacbio-data pacbio-sequencing sequencing variant-analysis variant-calling variants
Last synced: 19 Jul 2025
https://github.com/gauravcodepro/pacbiohifi-read-assimilator
a pacbiohifi read check for the quick view of the read types.
fasta-sequences fastq-files genome-analysis hifi pacbio-data pacbio-sequencing pangenome
Last synced: 19 Jul 2025
https://github.com/applicativesystem/view-pacbiohifi-awk
pacbiohifi view using awk
awk awk-programming-language awk-script bioinformatics-genome genome-analysis genome-bioinformatics genome-informatics pacbio pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing
Last synced: 16 Jan 2026
https://github.com/ibchgenomic/pacbiohifi-read-analyzer
pacbiohifi read analyzer using recursion
bioinformatics bioinformatics-tool pacbio pacbio-data pacbio-hifi-sequencing-reads pacbiohifi
Last synced: 18 Mar 2025
https://github.com/applicativesystem/go-pacbiohifi
profiling pacbiokmers and filtering pacbio kmers
bioinformatics golang golang-library pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi
Last synced: 03 Apr 2025
https://github.com/gauravcodepro/alignments-code-generator
a shell code getter for genomics alignments for the illumina and long reads from pacbio and the oxfordnanopore
illumina illumina-sequencing oxford-nanopore pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing
Last synced: 09 Aug 2025
https://github.com/applicativesystem/pacbio-nanopore-repeat-coverage
pacbio/oxford nanopore long reads repeat coverage estimation
bioinformatics genome-analysis genome-assembly pacbio pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing
Last synced: 12 Aug 2025
https://github.com/applicativesystem/pacbio-nanopore-polyatgc-remove
polyATGC pacbio/oxford nanopore estimator
bioinformatics genome-analysis genome-annotation pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi
Last synced: 15 Aug 2025
https://github.com/applicativesystem/pacbiohifi-sam-sort
go driven pacbiohifi sam sort for browser requests and caching
bioinformatics pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing
Last synced: 03 Apr 2025
https://github.com/ibchgenomic/pacbiohifi-desktop
a streamlit application for graphical analyisis of pacbiohifi reads
bioinformatics bioinformatics-analysis genome-analysis pacbio pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi sequencing-analysis sequencing-data
Last synced: 30 Mar 2025
https://github.com/sciencegenome/pacbiohifi-fasta-converter
bash based fasta conversion of pacbiohifi reads and filtering.
bioinformatics genome-analysis pacbio-data pacbio-sequencing pacbiohifi shell shell-script
Last synced: 18 Mar 2025
https://github.com/applicativesystem/pacbiohifi-report-classifier
pacbiohifi report classifier for any sequencing startups
bioinformatics genome-analysis pacbio-data pacbio-sequencing pacbiohifi python3
Last synced: 15 Aug 2025
https://github.com/applicativesystem/pacbiohifi-fasta-converter
bash based fasta conversion of pacbiohifi reads and filtering.
bioinformatics genome-analysis pacbio-data pacbio-sequencing pacbiohifi shell shell-script
Last synced: 15 Aug 2025
https://github.com/applicativesystem/pacbiohifi-desktop
a streamlit application for graphical analyisis of pacbiohifi reads
bioinformatics bioinformatics-analysis genome-analysis pacbio pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi sequencing-analysis sequencing-data
Last synced: 15 Aug 2025
https://github.com/applicativesystem/pacbiohifi-read-analyzer
pacbiohifi read analyzer using recursion
bioinformatics bioinformatics-tool pacbio pacbio-data pacbio-hifi-sequencing-reads pacbiohifi
Last synced: 15 Aug 2025
https://github.com/applicativesystem/go-longread-canvas
trimmomatic for long reads
bioinformatics genome-analysis genome-annotation oxford-nanopore pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing
Last synced: 03 Apr 2025
https://github.com/jacobwindsor/sqantiexplorer
Inter-sample analysis of SQANTI classifications
bioinformatics bioinformatics-tool bioinformatics-visualization genome-browser liftover pacbio pacbio-data pacbio-iso-seq rna-seq rna-sequencing sqanti tgs
Last synced: 16 Jul 2026
https://github.com/omicscode/genomeassembly-pacbiohifi
pacbioHifi genome assembly benchmarks
bioinformatics bioinformatics-data genome-alignment genome-analysis genome-assembly genome-sequencing pacbio-data pacbio-sequencing
Last synced: 06 Oct 2025
https://github.com/applicativesystem/pacbiohifi-awk
awk utilites for anlyzing pacbiohifi genomes and reads
awk awk-programming-language awk-script bioifnormatics-genome bioinformatics genome-analysis genome-informatics pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi
Last synced: 17 Jan 2026
https://github.com/ibchgenomic/pacbio-nanopore-repeat-coverage
pacbio/oxford nanopore long reads repeat coverage estimation
bioinformatics genome-analysis genome-assembly pacbio pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing
Last synced: 18 Mar 2025