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Projects in Awesome Lists tagged with genome-alignment
A curated list of projects in awesome lists tagged with genome-alignment .
https://github.com/mobinasri/secphase
Phasing reads with secondary alignments
bioinformatics genome-alignment genomics read-phasing
Last synced: 10 Nov 2024
https://github.com/gauravcodepro/protein-annotator
python package to analyze the protein coding regions for the genome annotation. It uses the miniprot for the alignment and gives you all the protein predicted mRNA, coding regions and other exon positions.
bioinformatics genome-alignment genome-analysis genome-annotation protein-sequences python-library
Last synced: 09 Nov 2024
https://github.com/hernanmd/hisat2_bovine
Scripts to index and align Bovine genome with HISAT2
bash bioinformatics featurecounts genome genome-alignment gff3 hisat2
Last synced: 09 Nov 2024
https://github.com/gauravcodepro/visualfreq
alignment visualization and phylogeny plotting for genome aliged regions.
alignment-strategies bioinformatics genome-alignment genome-analysis r-language r-programming
Last synced: 09 Nov 2024
https://github.com/gauravcodepro/intergenic-extractor
extracting all the intergenic regions from the genome annotation using the protein alignments.
annotation-tool bioinformatics genome-alignment genome-analysis genome-annotation protein-sequences
Last synced: 09 Nov 2024
https://github.com/gauravcodepro/genome-annotation-visualizer
a R function part to visualizae the genes coming from the genome alignment proteome annotations. This is a part of the evoseq R package
bioinformatics genome-alignment genome-annotation genome-assembly protein-sequences
Last synced: 09 Nov 2024
https://github.com/gauravcodepro/coding-stitcher-pangenome
a coding sticher for genome annotations, which stitch all your coding regions coming out of the exon alignments and will produce the gene visualization for the pangenome
annotation-tool bioinformatics bioinformatics-algorithms genome-alignment genome-annotation protein-alignment protein-sequences
Last synced: 09 Nov 2024
https://github.com/applicativesystem/rust-samtools-generateid-range
rust-samtools generateid range
bioinformatics genome-alignment genome-analysis genome-sequence-analysis indexeddb rust-lang samtools
Last synced: 07 Dec 2024
https://github.com/applicativesystem/rust-alignment-viewer
rust embedded approach for genome alignments
bioinformatics genome-alignment genome-analysis rust-crate rust-lang
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-samtools-generateid
rust-samtools generateid
bioinformatics genome-alignment genome-analysis genome-bioinformatics genome-sequence-analysis genome-sequencing samtools
Last synced: 16 Dec 2024
https://github.com/applicativesystem/protein-alignment
protein alignment gem from alignment to graphs
bioinformatics genome-alignment genome-analysis genome-anntoation-analysis genome-protein-alignment protein-alignment protein-annotation-analysis ruby rubylang rubylanguage
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-pangenome-matcher
rust pangenome matcher
bioinformatics genome-alignment genome-analysis genome-bioinformatics pangenome-alignment pangenomic-analysis pangenomics
Last synced: 16 Dec 2024
https://github.com/applicativesystem/alignmentgo
a cloud native application for large scale phylogenomics
genome-alignment genome-alignment-utilites genome-analysis genome-annotation genomes-comparison phylogenomics phylogenomics-bioinformatics
Last synced: 16 Dec 2024
https://github.com/applicativesystem/slurm-pbs-genome
slurm pbs based genome analysis utilities
bioinformatics genome-alignment genome-analysis genome-annoation-analysis genome-annotation genome-informatics slurm slurm-cluster
Last synced: 16 Dec 2024
https://github.com/applicativesystem/paf-plotter
formatting paf output alignments and plotting the paf alignments stats
bioinformatics genome-alignment genome-alignments genome-analysis genome-annotation paf protein-alignment protein-alignments
Last synced: 16 Dec 2024
https://github.com/applicativesystem/maf-analyzer-awk
maf alignments from protein to genome alignments using awk
awk awk-programming-language awk-script bioinformatics genome-alignment genome-analysis genome-anntoation protein-alignment protein-alignments
Last synced: 16 Dec 2024
https://github.com/applicativesystem/miniprot-protein-annotator
miniprot protein alignment analyzer
bioinformatics genome-alignment genome-analysis genome-annotation genome-bioinformatics genome-informatics protein-alignment
Last synced: 16 Dec 2024
https://github.com/applicativesystem/go-alignment-block-getter
alignment block getter for getting blocks of alignment from specific alignments
bioinformatics evolutionary-computation genome-alignment genome-analysis genome-sequencing golang-package phylogenomics phylogenomics-bioinformatics phylogenomics-golang
Last synced: 16 Dec 2024
https://github.com/applicativesystem/intergenic-extractor
intergenic region analyzer from protein alignments to draft genomes.
alignment bioinformatics genome-alignment genome-alignments genome-analysis genome-annotation protein-alignment protein-ligand-interactions
Last synced: 16 Dec 2024
https://github.com/applicativesystem/go-alignment-block-estimate
estimate blocks alignment stats
bioinformatics bioinformatics-tool genome-alignment genome-alignment-bioinformatics genome-analysis golang-package phylogenomics phylogenomics-bioinformatics
Last synced: 16 Dec 2024
https://github.com/applicativesystem/genome-alignment
genome and transcriptome alignment extraction
bioinformatics genome-alignment genome-alignments genome-analysis protein-alignment protein-alignments protein-genome-alignment
Last synced: 16 Dec 2024
https://github.com/applicativesystem/genomeassembly-pacbiohifi
pacbioHifi genome assembly benchmarks
bioinformatics bioinformatics-data genome-alignment genome-analysis genome-assembly genome-sequencing pacbio-data pacbio-sequencing
Last synced: 16 Dec 2024
https://github.com/applicativesystem/coding-stitcher-pangenome
stitching coding regions from exon alignments for the protein to genome alignments.
bioinformatics genome-alignment genome-alignments genome-annotation gff-toolkit gff3 gff3-format protein-alignment protein-alignments
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-samtools-regiontag-viewer
rust samtools region tag viewer
bioinformatics genome-alignment genome-annotation genome-assembly genome-bioinformatics genome-sequencing rust-samtools
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-samtools-extractor
rust samtools extractor
bioinformatics-algorithms bioinofrmatics genome-alignment genome-analysis genome-bioinformatics genome-sequencing
Last synced: 16 Dec 2024
https://github.com/applicativesystem/compleasm-awk
compleasm genome coverage analysis using awk
awk awk-programming-language awk-script bioinformatics genome-alignment genome-alignment-utilites genome-analysis genome-annotation genome-annotation-analysis protein-alignment
Last synced: 16 Dec 2024
https://github.com/koadman/mauvealigner
command-line interface software for genome alignment
bacterial-genomes genome-alignment genomes-comparison human-genomes
Last synced: 07 Nov 2024
https://github.com/applicativesystem/bcftools-utility
bactools-utility for dealing with bcf files
bcf bioinformatics genome-alignment genome-alignment-utilites genome-alignments genome-analysis genome-bioinformatics genome-informatics
Last synced: 16 Dec 2024
https://github.com/koadman/libmems
a genome alignment library built around seed-and-extend algorithms for maximal exact and unique matches
bacterial-genomes genome-alignment genome-analysis genomics human-genomes
Last synced: 07 Nov 2024
https://github.com/gauravcodepro/miniprot-protein-annotator
from protein alignments to deep learning preparatory.
bioinformatics genome-alignment genome-annotation genome-assembly genome-graph protein-sequences
Last synced: 09 Nov 2024