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Awesome

An open API service indexing awesome lists of open source software.

Projects in Awesome Lists by hernanmd

A curated list of projects in awesome lists by hernanmd .

https://github.com/hernanmd/pi

Pharo Install - A CLI tool for installing Pharo Smalltalk packages

package-manager pharo pharo-smalltalk smalltalk smalltalkhub smalltalkhub-repositories

Last synced: 23 Jun 2025

https://github.com/hernanmd/structurepipelines

Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)

bioinformatics clumpp population-genetics shell-script structure

Last synced: 09 Aug 2025

https://github.com/hernanmd/badges

A tool to build your git repository badges in Pharo

badges pharo pharo-smalltalk smalltalk

Last synced: 23 Oct 2025

https://github.com/hernanmd/GraphViz

Pharo Smalltalk GraphViz binding

graphs graphviz pharo pharo-smalltalk smalltalk

Last synced: 11 May 2025

https://github.com/hernanmd/graphviz

Pharo Smalltalk GraphViz binding

graphs graphviz pharo pharo-smalltalk smalltalk

Last synced: 14 Sep 2025

https://github.com/hernanmd/merlin

Wizard builder for Pharo

pharo smalltalk wizard

Last synced: 07 May 2025

https://github.com/hernanmd/commonutils

Common method utilities for Pharo Smalltalk

pharo pharo-smalltalk smalltalk utilities utility-library

Last synced: 23 Oct 2025

https://github.com/hernanmd/omz-plugin-browser

Oh-My-Zsh Plugin Browser

oh-my-zsh omz omz-plugin pharo smalltalk

Last synced: 14 Mar 2026

https://github.com/hernanmd/falsehoods_smalltalk

Falsehoods Programmers Believe About Smalltalk

Last synced: 12 Feb 2026

https://github.com/hernanmd/ISO3166

ISO 3166-1 implementation for Pharo Smalltalk

countries iso3166 letter-string-country pharo pharo-smalltalk smalltalk

Last synced: 11 May 2025

https://github.com/hernanmd/iso3166

ISO 3166-1 implementation for Pharo Smalltalk

countries iso3166 letter-string-country pharo pharo-smalltalk smalltalk

Last synced: 23 Oct 2025

https://github.com/hernanmd/ccbc

Code Critics Bar Chart for Pharo Smalltalk

chart critic critique pharo pharo-smalltalk plot refactoring smalltalk

Last synced: 24 Sep 2025

https://github.com/hernanmd/applicationsecurity

A Smalltalk domain-independent security model which you can easily instantiate in your applications

nacl pbkdf2 pharo pharo-smalltalk security security-tools smalltalk

Last synced: 11 Apr 2025

https://github.com/hernanmd/reprex-it

Evaluate, format and share Pharo scripts and expressions on Github or Discord.

evaluator pharo reprex smalltalk

Last synced: 23 Jun 2026

https://github.com/hernanmd/metacellofiledownload

Helpers to download resources in Baseline or Metacello Configurations (Pharo Smalltalk)

metacello metacello-configurations pharo pharo-smalltalk smalltalk

Last synced: 10 Aug 2025

https://github.com/hernanmd/pharo-vm-builder

Scripts to ease Pharo VM building

Last synced: 18 Jun 2026

https://github.com/hernanmd/SpecUIAddOns

Add-ons for Spec (Smalltalk UI description framework)

pharo pharo-smalltalk smalltalk spec ui ui-components

Last synced: 11 May 2025

https://github.com/hernanmd/rehh2-docker

Dockerfile for REHH version 2.0.4

dockerfile population-genomics r

Last synced: 19 Jun 2026

https://github.com/hernanmd/specuiaddons

Add-ons for Spec (Smalltalk UI description framework)

pharo pharo-smalltalk smalltalk spec ui ui-components

Last synced: 28 Jul 2025

https://github.com/hernanmd/penncnv.illumina

Workflow for running PennCNV with Illumina platform final report

bash-script bioinformatics bioinformatics-pipeline cnv pharo pharo-smalltalk smalltalk

Last synced: 19 Jan 2026

https://github.com/hernanmd/license-selector

Pharo app to browse updated available licenses from SPDX License List

license-management licenses pharo pharo-smalltalk smalltalk spdx

Last synced: 05 Oct 2025

https://github.com/hernanmd/FuzzySearcher

Simplified Smalltalk implementation of ambiguous matching algorithm based on Baeta-Yates, R.A., Gonnet, G.H., Wu, S. and Manber, U

ambiguous-matching-algorithm baeta-yates manber pharo pharo-smalltalk smalltalk

Last synced: 11 May 2025

https://github.com/hernanmd/bioscripts

A collection of miscellaneous bioinformatics scripts

affymetrix bash bioinformatics cnv illumina shapeit2

Last synced: 11 Sep 2025

https://github.com/hernanmd/penncnv.affy

Workflow for running PennCNV with Affymetrix platform files

bash-script bioinformatics bioinformatics-pipeline cnv shell-script

Last synced: 17 Jun 2026

https://github.com/hernanmd/codegenerator

Collection of Pharo Smalltalk utilities related with code generation

codegenerator design-patterns pharo pharo-smalltalk smalltalk

Last synced: 18 Jan 2026

https://github.com/hernanmd/pinner

Pharo Live Browsing History Viewer

browsing-history calypso pharo pharo-smalltalk smalltalk

Last synced: 28 Feb 2026

https://github.com/hernanmd/fuzzysearcher

Simplified Smalltalk implementation of ambiguous matching algorithm based on Baeta-Yates, R.A., Gonnet, G.H., Wu, S. and Manber, U

ambiguous-matching-algorithm baeta-yates manber pharo pharo-smalltalk smalltalk

Last synced: 26 Oct 2025

https://github.com/hernanmd/animalgeo

World animal species synonyms and geolocations dictionary

animal-science breeds curation database geolocation-database population-genetics

Last synced: 15 Jun 2025

https://github.com/hernanmd/hisat2_bovine

Scripts to index and align Bovine genome with HISAT2

bash bioinformatics featurecounts genome genome-alignment gff3 hisat2

Last synced: 13 May 2026

https://github.com/hernanmd/fixeddecimal

Representation of precise decimals in Pharo Smalltalk

decimal-numbers magnitude pharo pharo-smalltalk

Last synced: 06 Jul 2025

https://github.com/hernanmd/GADM

A browseable GADM world tree for Pharo Smalltalk

gadm geolocation geoname pharo pharo-smalltalk smalltalk

Last synced: 11 May 2025

https://github.com/hernanmd/Z3950

ZOOM FFI Client for Z39.50 Protocol. A binding of the ZOOM Yaz client for Squeak and Pharo

pharo pharo-smalltalk smalltalk yaz z39-50

Last synced: 11 May 2025

https://github.com/hernanmd/psotd

Pharo Script of the Day Repository

pharo pharo-smalltalk scripts smalltalk

Last synced: 23 Jul 2025

https://github.com/hernanmd/z3950

ZOOM FFI Client for Z39.50 Protocol. A binding of the ZOOM Yaz client for Squeak and Pharo

pharo pharo-smalltalk smalltalk yaz z39-50

Last synced: 21 Aug 2025

https://github.com/hernanmd/cflow-ui

Friendly UI Front-End to cflow in Pharo

c callgraph cflow dependency-graph pharo static-analysis

Last synced: 07 Jan 2026

https://github.com/hernanmd/mydot

My dotted files for bash

aliases bash dotfiles shell

Last synced: 17 Apr 2026

https://github.com/hernanmd/stringextensions

Add useful String extension method to Pharo String class

levenshtein pharo pharo-smalltalk smalltalk string string-manipulation string-matching

Last synced: 14 Oct 2025

https://github.com/hernanmd/libstemmer

Pharo uFFI wrapper for the Porter Stemmer algorithm

pharo pharo-smalltalk porter-stemmer smalltalk stemming stemming-algorithm

Last synced: 27 Feb 2026

https://github.com/hernanmd/quantisnp2

Last synced: 19 Mar 2026

https://github.com/hernanmd/sparql

Generic SPARQL client API for Smalltalk

pharo pharo-smalltalk sparql

Last synced: 15 Jun 2026

https://github.com/hernanmd/gadm

A browseable GADM world tree for Pharo Smalltalk

gadm geolocation geoname pharo pharo-smalltalk smalltalk

Last synced: 15 Jun 2026

https://github.com/hernanmd/edger.enhancedvolcanoplot

Enhanced volcano plot using edgeR data

bioinformatics edger r rna-seq rnaseq volcano

Last synced: 24 Jun 2026

https://github.com/hernanmd/eohw

Extent of Homozygosity Workflow for the rehh package

bioinformatics biosmalltalk pharo pharo-smalltalk

Last synced: 24 Jun 2026

https://github.com/hernanmd/ldheatmap_equine.2018

Plot .ld with LDHeatmap (first case applied to Equine 65k Microarray)

heatmaps linkage-disequilibrium microarray r

Last synced: 19 Jun 2026

https://github.com/hernanmd/xrdpmon

A tmuxp XRDP monitoring environment

Last synced: 05 Jul 2025

https://github.com/hernanmd/seaside-bootstrap-magritte-voyage

A meta-package for Pharo which installs latest stable releases of Seaside, Bootstrap, Voyage and Magritte

bootstrap magritte no-sql pharo voyage

Last synced: 14 May 2026

https://github.com/hernanmd/blastqb

Blast Query Builder, part of the PhyloclassTalk software for Pharo Smalltalk

bioinformatics biosmalltalk blast ncbi-blast pharo pharo-smalltalk query query-builder user-interface

Last synced: 05 Oct 2025

https://github.com/hernanmd/pharo-startup-settings

My Pharo startup actions

Last synced: 19 Mar 2026

https://github.com/hernanmd/xbase

Package giving full access to Xbase (dBASE) files (dBASE III/IV) in Smalltalk

dbase pharo pharo-smalltalk smalltalk xbase

Last synced: 11 Jun 2026

https://github.com/hernanmd/callgraphviz

Call graph visualization in Pharo using GraphViz

call-graph graphviz pharo pharo-smalltalk

Last synced: 20 Jan 2026

https://github.com/hernanmd/needleman-wunsch

Implementation of the Needleman-Wunsch algorithm in Pharo

alignment dynamic-programming needleman-wunsch needleman-wunsch-algorithm pharo smalltalk

Last synced: 20 Jan 2026

https://github.com/hernanmd/lightweightclasses

Instances Browser which could be used to view or edit instances behavior inside a classic System Browser-like user interface (you will need to have installed the OmniBrowser framework in your image). See Debugging Objects Smalltalk Report article for usage instructions.

Last synced: 27 Jan 2026

https://github.com/hernanmd/stner

Pharo Smalltalk interface to the Stanford Named Entity Recognizer

pharo pharo-smalltalk smalltalk stanford-ner

Last synced: 17 Jun 2026

https://github.com/hernanmd/file-dialog

Replacement for Pharo's native dialog

dialogs pharo pharo-smalltalk

Last synced: 27 Sep 2025

https://github.com/hernanmd/ProcessWrapper

ProcessWrapper is a plugin + wrapper code for Pharo Smalltalk Windows process execution

pharo pharo-smalltalk plugin-wrapper smalltalk

Last synced: 11 May 2025

https://github.com/hernanmd/StNER

Pharo Smalltalk interface to the Stanford Named Entity Recognizer

pharo pharo-smalltalk smalltalk stanford-ner

Last synced: 11 May 2025

https://github.com/hernanmd/html5-named-entities

A basic reader to obtain W3C named HTML entities in a Dictionary

named-entities pharo smalltalk w3c

Last synced: 11 Jul 2025

https://github.com/hernanmd/openponkroassal2

Roassal2 extensions from OpenPonk

Last synced: 28 Jan 2026

https://github.com/hernanmd/rstemplates

README.md Section Templates

Last synced: 01 Mar 2026

https://github.com/hernanmd/ssnps_wcf2018

Find shared SNPs between different microarray chips

affymetrix bash bioinformatics illumina microarrays snps

Last synced: 19 Apr 2026

https://github.com/hernanmd/json-benchmarks

JSON Benchmarks for Pharo

benchmarks json pharo pharo-smalltalk

Last synced: 08 Feb 2026

https://github.com/hernanmd/connectors

Ned Konz's Connectors port to Pharo Smalltalk >= 3.0 (Work in progress)

Last synced: 26 Feb 2026

https://github.com/hernanmd/primerminer_workflow

A workflow using PrimerMiner to automate downloading of OTUs

Last synced: 26 Feb 2026

https://github.com/hernanmd/applicationupdater

Provides a simple class for performing scheduled or manual application updates

Last synced: 26 Feb 2026

https://github.com/hernanmd/xmlpullparser

XMLPullParser is a streaming XML parser for Smalltalk

Last synced: 26 Feb 2026

https://github.com/hernanmd/instanceencoder

Smalltalk helpers to encode and decode files or instances of any object that can be streamed to methods (either class or instance side)

Last synced: 10 Feb 2026

https://github.com/hernanmd/nacl

Last synced: 27 Feb 2026

https://github.com/hernanmd/languagedetection

Language Detection API is a service to query the language of a given input text in Smalltalk

language language-detection-api languagedetection pharo pharo-smalltalk smalltalk

Last synced: 19 Jun 2026

https://github.com/hernanmd/csv_benchmark_data

Data for CSV benchmarks

Last synced: 12 Feb 2026

https://github.com/hernanmd/pharo-cimatrix-creator

CI matrix generator

Last synced: 11 Jun 2026

https://github.com/hernanmd/dpp

Last synced: 28 Feb 2026

https://github.com/hernanmd/st-iso11784

ISO 11784 Project using Pharo Smalltalk

Last synced: 13 Feb 2026

https://github.com/hernanmd/biobertrun

Last synced: 17 Jun 2026

https://github.com/hernanmd/processwrapper

ProcessWrapper is a plugin + wrapper code for Pharo Smalltalk Windows process execution

pharo pharo-smalltalk plugin-wrapper smalltalk

Last synced: 19 Jun 2026

https://github.com/hernanmd/cgatoh_goat.2018

FROH Analysis and Post-Analysis using cgaTOH and R

bioinformatics r

Last synced: 23 Jun 2026

https://github.com/hernanmd/knowledgebase

Implements a Collection of information based in trial cases

collection knowledge-base knowledgebase pharo pharo-smalltalk smalltalk

Last synced: 25 Oct 2025

https://github.com/hernanmd/resources

Resource files for projects

Last synced: 28 Feb 2026

https://github.com/hernanmd/kinship

Repositorio para grupo IGEVET

Last synced: 28 Feb 2026

https://github.com/hernanmd/naturalsmalltalk

Natural Language Processing with Smalltalk

Last synced: 03 Mar 2026