Projects in Awesome Lists by applicativesystem
A curated list of projects in awesome lists by applicativesystem .
https://github.com/applicativesystem/plant-resistance-gene-logistic-regression
logistic regressor for the plant disease resistance genes using sequence features and expression.
bioinformatics genome-analysis genome-annotation logistic-regression plant-disease-detection plant-disease-resistance plant-monitoring plant-resistance-genes
Last synced: 16 Dec 2024
https://github.com/applicativesystem/go-alignment-estimate
a block basis estimate of the whole genome alignment estimates
alignment-algorithm alignment-strategies bioinformatics genome-alignments genome-alignments-bioinfromatics genome-analysis phylogenmics-golang phylogenomics phylogenomics-bioinformatics
Last synced: 03 Apr 2025
https://github.com/applicativesystem/go-alignment-proportion
golang for estimating the genome site proportion
alignment-algorithms alignments bioinformatics genome-analysis genome-analysis-annotation phylogenetic-analysis phylogenetic-comparative-methods phylogenomics phylogenomics-bioinformatics
Last synced: 03 Apr 2025
https://github.com/applicativesystem/rust-pangenome
rust pangenome for pangenome alignments
bioinformatics genome-analysis metagenomics metagenomics-data rust-lang
Last synced: 12 Apr 2025
https://github.com/applicativesystem/ml-expression-sequence
sequence and expression based machine learning
bioinformatics expression-analysis genome-analysis genome-features genome-informatics machine-learning machinelearning sequence-features
Last synced: 16 Dec 2024
https://github.com/applicativesystem/ena-rust-api
rustlang implementation for accessing ena for any datasets.
bioinformatics european-nucleotide-archive genome-analysis rust-crate rust-lang
Last synced: 14 Jan 2025
https://github.com/applicativesystem/hashicorp-initiator
hashicorp terraform instance creator
devops devops-platform devops-tools hashicorp hashicorp-terraform
Last synced: 26 Feb 2025
https://github.com/applicativesystem/rust-serverless
a rustlang multiconnect high performance computing
high-performance-computing rust-crate rust-lang server-side server-side-rendering system-administration system-programming
Last synced: 14 Jan 2025
https://github.com/applicativesystem/rust-samtools-generateid-range
rust-samtools generateid range
bioinformatics genome-alignment genome-analysis genome-sequence-analysis indexeddb rust-lang samtools
Last synced: 07 Dec 2024
https://github.com/applicativesystem/short-long-read-alignment-codegetter
codegetter for illumina, pacbio and oxford long read and short reads
bioinformatics genome-analysis illumina illumina-sequencing pacbio-hifi-sequencing-reads pacbio-sequencing shell shellscript
Last synced: 11 May 2025
https://github.com/applicativesystem/rust-samtools
all rust-samtools combined into a single application
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-de-bruijn-graphs
construction, reading of colored ompacted de Bruijn graphs
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-bwt-algorithm
rust implementation of Burrows-Wheeler transform
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-samtools-genomeview
rust-samtools-genomeview
bioinformatics genome-alignments genome-analysis genome-bioinformatics genome-capture genome-sequencing
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-alignment-viewer
rust embedded approach for genome alignments
bioinformatics genome-alignment genome-analysis rust-crate rust-lang
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-pangenome-harmonic-mean
rust pangenome harmonic mean
bioinformatics genome-bioinformatics pangenome pangenome-alignment pangenome-inference
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-samtools-generateid
rust-samtools generateid
bioinformatics genome-alignment genome-analysis genome-bioinformatics genome-sequence-analysis genome-sequencing samtools
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-fastp-clip-base
rust fastp quality drop
bioinformatics genome-analysis genome-sequencing illumina illumina-sequencing
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-connect
a rustlang devops/system administration application
cluster-computing high-performance-computing rust-library slurm-job-scheduler slurm-workload-manager system-administration system-programming
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-deeplearning-alignment
vector preparation for deep learning for masked alignment prediction
Last synced: 16 Dec 2024
https://github.com/applicativesystem/tair-pubmed-connect
tair id to pubmed links for articls, genes, annotations, locus tag
genome-analysis genome-annotation literature-modelling ncbi ncbi-database ncbi-sra pubmed pubmed-literature tair tair3 topic-analysis
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-fastp-sync
rustic version of fastp each fastp subcommand in a separate multithreaded application
bioinformatics bioinformatics-analysis genome-analysis genome-sequencing illumina illumina-sequencing
Last synced: 16 Dec 2024
https://github.com/applicativesystem/go-system-backup-program
golang system backend application
backend golang-package high-performance-computing server-side-rendering system-programming systembackup
Last synced: 03 Apr 2025
https://github.com/applicativesystem/trinity-analyzer
from trinity assembly to deep learning
genome-analysis genome-annotation transcriptome-annotation transcriptome-assembly trinity
Last synced: 16 Dec 2024
https://github.com/applicativesystem/go-genomesummarizer
golang genome summarizer and implements a linear algebra
bioinformatics bioinformatics-analysis genome-analysis genome-annotation genome-assembly golang
Last synced: 03 Apr 2025
https://github.com/applicativesystem/tair-gff-ids-analyzer
ease of access gff files from tair for reading tair ids.
arabidopsis arabidopsis-thalian bioinformatics genome-analysis genome-annotation genome-informatics gff gff-toolkit gff3 tair tair3
Last synced: 16 Dec 2024
https://github.com/applicativesystem/applicativesystem
Gaurav Sablok README
Last synced: 16 Dec 2024
https://github.com/applicativesystem/semantic-ontologies
generating the ontology graphs and the system relationship.
bioinformatics genome-analysis genome-annotation genome-annotation-analysis ontologies ontology ontology-alignment ontology-search
Last synced: 16 Dec 2024
https://github.com/applicativesystem/miseq-nextseq-novaseq-assembly
quality control, genome assembly, mapping for miseq, novaseq and nextseq reads
bioinformatics genome-assembly genome-sequencing illumina illumina-sequencing miseq nextseq
Last synced: 16 Dec 2024
https://github.com/applicativesystem/snakemake-utility
bash based utility for writing the snakemake iteration
bioinformatics genome-analysis shell-script snakemake snakemake-pipeline snakemake-wrappers
Last synced: 03 Apr 2025
https://github.com/applicativesystem/rust-pangenome-snatcher
rust pangenome snatcher
bioinformatics genome-analysis genome-analysis-annotation pangenome pangenome-analysis pangenome-inference
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-fastp-clipped
rust implementation of the tilled window approach
bioinformatics bioinformatics-analysis bioinformatics-data genome-analysis genome-annotation illumina-sequencing
Last synced: 16 Dec 2024
https://github.com/applicativesystem/paf-analyzer-awk
analyzing paf alignments using awk
awk awk-programming-language bioinformatics bioinformatics-genome genome-alignments genome-analysis genome-informatics paf
Last synced: 03 Apr 2025
https://github.com/applicativesystem/mrna-plotter
plotting and summary information tools for the mRNA proteome to genome alignments.
bioifnormatics bioinformatics-genome-informatics bioinformatics-scripts genome-analysis genome-annotation genome-sequencing transcriptome-annotation
Last synced: 16 Dec 2024
https://github.com/applicativesystem/numpy-builder
code getter and numpty operator for numpy operations
data-analysis numpy numpy-python shell-script
Last synced: 16 Dec 2024
https://github.com/applicativesystem/plant-resistance-gene-fetcher
plant resistance gene analyzer for getting the dna and protein sequences.
genome-analysis genome-annotation plant-disease plant-disease-detection plant-monitoring plant-resistance-genes resistance-genes
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-pangenome-tools
rust deeplearning and segmentation from the aligned reads
Last synced: 16 Dec 2024
https://github.com/applicativesystem/sqlite3-genome
python implementation of sqlite3 for genome assembly
bioinformatics database-management database-migrations genome-analysis python-app python3 sqlite3 sqlite3-database
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-pangenome-matcher
rust pangenome matcher
bioinformatics genome-alignment genome-analysis genome-bioinformatics pangenome-alignment pangenomic-analysis pangenomics
Last synced: 16 Dec 2024
https://github.com/applicativesystem/pangenome-genome-assembly
bash based pangenome assembly from short and long reads
bioinformatics bioinformatics-data genome-analysis genome-assembly genome-assembly-evaluation pangenome
Last synced: 16 Dec 2024
https://github.com/applicativesystem/pangenome-single-copy-gene
single copy pangenome analysis from alignments to phylogenomics
bioinformatics bioinformatics-analysis genome-analysis genome-analysis-annotation genome-pangenome pangenome pangenome-pipeline
Last synced: 16 Dec 2024
https://github.com/applicativesystem/pacbiohifi-report-classifier
pacbiohifi report classifier for any sequencing startups
bioinformatics genome-analysis pacbio-data pacbio-sequencing pacbiohifi python3
Last synced: 16 Dec 2024
https://github.com/applicativesystem/alignmentgo
a cloud native application for large scale phylogenomics
genome-alignment genome-alignment-utilites genome-analysis genome-annotation genomes-comparison phylogenomics phylogenomics-bioinformatics
Last synced: 03 Apr 2025
https://github.com/applicativesystem/pangenome-metagenomics
pangenome metagenomics normlization for specific ids
bioinformatics genome-analysis genome-annotation genome-informatics metagenomics metagenomics-binning metagenomics-counts metagenomics-data
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-samtools-filter
rust samtools
bioinformatics genome-analysis genome-browser genome-capture genome-sequencing
Last synced: 16 Dec 2024
https://github.com/applicativesystem/pacbiohifi-fasta-converter
bash based fasta conversion of pacbiohifi reads and filtering.
bioinformatics genome-analysis pacbio-data pacbio-sequencing pacbiohifi shell shell-script
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-samtools-genomecapture
rust samtools genomecapture
bioinformatics genome-analysis genome-analysis-annotation genome-assembly genome-bioinformatics genome-mapper genome-sequencing
Last synced: 16 Dec 2024
https://github.com/applicativesystem/universitat-potsdam-devops
a devops streamlit application for slurm job make
devops devops-platform devops-tools slurm-batch slurm-cluster slurm-job slurm-utility
Last synced: 16 Dec 2024
https://github.com/applicativesystem/tairaccession
python package for arabidopsis genome analysis
arabidopsis arabidopsis-thaliana bioinformatics genome-analysis genome-annotation genome-browser
Last synced: 16 Dec 2024
https://github.com/applicativesystem/sra-explorer
explore sra databases and sequence retrieval
bioinformatics ncbi ncbi-database ncbi-sra shell shell-script sra sratoolkit
Last synced: 16 Dec 2024
https://github.com/applicativesystem/pacbiohifi-desktop
a streamlit application for graphical analyisis of pacbiohifi reads
bioinformatics bioinformatics-analysis genome-analysis pacbio pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi sequencing-analysis sequencing-data
Last synced: 16 Dec 2024
https://github.com/applicativesystem/go-reference-alignment-estimate
estimate the alignment stats based on a selected reference genome or gene sequence from the alignment
bioinformatics evolutionary-biology evolutionary-computation genome-alignment-bioinformatics phylogenomics phylogenomics-bioinformatics phylogenomics-golang whole-genome-sequencing
Last synced: 03 Apr 2025
https://github.com/applicativesystem/microbiome-annotation
genome annotation analyzer for the microbiome analysis
bioinformatics genome-analysis microbiome microbiome-analysis microbiome-annotation microbiome-data
Last synced: 16 Dec 2024
https://github.com/applicativesystem/plant-resistance-gene-isolator
functional gene assembly of plant resistance genes
bioinformatics genome-analysis genome-anntoation-analysis genome-informatics plant-disease plant-disease-detection plant-genes plant-resistance-genes resistance-gene-genome resistance-genes
Last synced: 16 Dec 2024
https://github.com/applicativesystem/miniprot-analyzer
miniprot protein analyzer
bioinformatics genome-analysis genome-annotation protein-alignment protein-alignments protein-sequences
Last synced: 16 Dec 2024
https://github.com/applicativesystem/ontology-graphs
analyzing ontology for graph analysis
bioinformatics domain-graphs genome-analysis genome-annotation ontology ontology-graphs ontology-search
Last synced: 16 Dec 2024
https://github.com/applicativesystem/plant-resistance-gene-miner
plant resistance gene miner for linking the resistance gene to genbank id.
bioinformatics genome-analysis genome-annotation plant-diseaase-detection plant-disease-detection plant-genomics plant-informatics plant-resistance-genes
Last synced: 16 Dec 2024
https://github.com/applicativesystem/pacbio-nanopore-polyatgc-remove
polyATGC pacbio/oxford nanopore estimator
bioinformatics genome-analysis genome-annotation pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi
Last synced: 16 Dec 2024
https://github.com/applicativesystem/phylogenomics-apptainer
apptainer image for complete phylogenomics and evolutionary analysis
apptainer apptainer-container devops devops-platform devops-team high-performance-computing phylogenomics phylogenomics-bioinformatics
Last synced: 16 Dec 2024
https://github.com/applicativesystem/pbs-devops
pbs writer for pbs computing, writes the job submission for pbs
bioinformatics devops devops-team devops-tools slurm slurm-cluster slurm-job slurm-job-scheduler
Last synced: 16 Dec 2024
https://github.com/applicativesystem/phytozome-pacid-fetcher
analyzer for phytozome gff files and pacid for genes.
bioinformatics genome-analysis gff gff-toolkit gff3 phytozome phytozome-genome-analyzer
Last synced: 16 Dec 2024
https://github.com/applicativesystem/paf-plotter
formatting paf output alignments and plotting the paf alignments stats
bioinformatics genome-alignment genome-alignments genome-analysis genome-annotation paf protein-alignment protein-alignments
Last synced: 16 Dec 2024
https://github.com/applicativesystem/pacbiohifi-read-analyzer
pacbiohifi read analyzer using recursion
bioinformatics bioinformatics-tool pacbio pacbio-data pacbio-hifi-sequencing-reads pacbiohifi
Last synced: 16 Dec 2024
https://github.com/applicativesystem/metabolic-json
a metabolic json parser and streamlit for BIGG database
bioinformatics genome-analysis genome-bioinformatics genome-informatics json json-api json-data metabolic-models metabolic-pathways metabolic-reconstruction
Last synced: 16 Dec 2024
https://github.com/applicativesystem/maf-analyzer-awk
maf alignments from protein to genome alignments using awk
awk awk-programming-language awk-script bioinformatics genome-alignment genome-analysis genome-anntoation protein-alignment protein-alignments
Last synced: 03 Apr 2025
https://github.com/applicativesystem/miniprot-protein-annotator
miniprot protein alignment analyzer
bioinformatics genome-alignment genome-analysis genome-annotation genome-bioinformatics genome-informatics protein-alignment
Last synced: 16 Dec 2024
https://github.com/applicativesystem/mirna-neural-network
miRNA target predictions analyzer for neural networks
bioinformatics deep-learning deep-neural genome-analysis genome-annotation genome-annotation-analysis microrna micrornas micrrna-targets neural-network target-prediction-microrna
Last synced: 03 Apr 2025
https://github.com/applicativesystem/go-phylogenomics-tab
estimation of phygenome conservation across the genome alignments
bioinformatics data-structures evolutionary-algorithms genome genome-analysis genome-phylogenomics phylogenomics phylogenomics-golang
Last synced: 03 Apr 2025
https://github.com/applicativesystem/go-phylogenomics-filter
go phylogenomics routines.
bioinformatics genome-analysis genome-annotation-analysis genome-anntoation golang-application golang-package phylogenomics
Last synced: 03 Apr 2025
https://github.com/applicativesystem/tcp-analyzer
golang tcp-analyzer container network proxies
devops devops-platform golang golang-package network-programming tcp-client tcp-ip tcpdump
Last synced: 03 Apr 2025
https://github.com/applicativesystem/go-alignment-merger
a goroutines implementation for clipping off the genome alignment and making genome structs
bioinformatics genome-analysis genome-phylogenomics goroutine phylogenomics phylogenomics-golang
Last synced: 03 Apr 2025
https://github.com/applicativesystem/go-longread-canvas
trimmomatic for long reads
bioinformatics genome-analysis genome-annotation oxford-nanopore pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing
Last synced: 03 Apr 2025
https://github.com/applicativesystem/geospatial-python-javascript
geospatial application development using python and javascript
Last synced: 03 Apr 2025
https://github.com/applicativesystem/domain-analyzer
domain analyzer for analyzing interpro domains
bacterial-domains bacterial-genome-analysis bacterial-genomes bioinfromatics domain-analysis genome-analysis interpro
Last synced: 16 Dec 2024
https://github.com/applicativesystem/coding-plotter
plotting and summary tools for the protein to genome alignments for genome annotations.
bioinformatics bioinformatics-genome genome-annotation genome-annotation-analyzer genome-informatics genome-protein-alignments
Last synced: 16 Dec 2024
https://github.com/applicativesystem/bacterial-genome-deep-learning
bacterial genome deep learning using keras
bacterial-deep bacterial-metagenomics deep-learning-algorithms deep-neural-networks deeplearning genome-analysis metagenomes
Last synced: 16 Dec 2024
https://github.com/applicativesystem/rust-samtools-extractor
rust samtools extractor
bioinformatics-algorithms bioinofrmatics genome-alignment genome-analysis genome-bioinformatics genome-sequencing
Last synced: 16 Dec 2024
https://github.com/applicativesystem/bacterial-ko-phylogenomics
analyzing bacterial genome based ontologies and phylogenomics informativeness
bioinformatics bioinformatics-scripts genome-analysis genome-annotation metagenomics metagenomics-analysis metagenomics-bioinformatics metagenomics-data phylogenomics phylogenomics-pipeline
Last synced: 16 Dec 2024
https://github.com/applicativesystem/bigg-slint-interface
a BIGG slint interface which will give you all the information associated with the metabolic model
biggdatabase bioinformatics genome-analysis genome-annotation metabolic-models metabolic-pathways
Last synced: 16 Dec 2024
https://github.com/applicativesystem/arabidopsis-genome-analyzer
desktop application for analysis of the complete arabidopsis genome
arabidopsis-thaliana bioinformatics desktop-app desktop-application genome-analysis genome-annotation webapp
Last synced: 03 Apr 2025
https://github.com/applicativesystem/apptainer-images
apptainer-images for the machine learning coding potential
apptainer apptainer-container devops-platform devops-tools high-performance-computing
Last synced: 16 Dec 2024
https://github.com/applicativesystem/arabidopsis-api-analyzer
easing your access to arabidopsis tair
api arabidopsis arabidopsis-thaliana genome-analysis genome-annotation genome-sequencing tair tair3
Last synced: 16 Dec 2024
https://github.com/applicativesystem/pubmed-analyzer
analyzing pubmed articles for natural language processing.
bioinformatics genome-analysis language-model language-processing literature-management literature-mining pubmed python3
Last synced: 16 Dec 2024
https://github.com/applicativesystem/langchain-application
a langchain literature miner from pubmed
bioinformatics genome-analysis genome-bioinformatics genome-informatics langchain langchain-python literature-analysis literature-mining literature-search nacbi-pubmed ncbi pubmed
Last synced: 16 Dec 2024
https://github.com/applicativesystem/go-plotter
golang plotter for whole genome
annotation-visualization bioinformatics genome-analysis genome-annotation genome-sequencing
Last synced: 03 Apr 2025
https://github.com/applicativesystem/trinity-transdecoder-view
a trinity transdecoder utility for getting information from the trinity transcript assembly
bioinformatics bioinformatics-analysis genome-analysis python-3 transcriptomics trinity
Last synced: 03 Dec 2024
https://github.com/applicativesystem/python-datastructure
my approach of solving the leetcode, interviewcode and other questions
Last synced: 03 Dec 2024
https://github.com/applicativesystem/go-wiggle-tools
golang implementation of wiggle tools compression based algorithm
Last synced: 09 Apr 2025
https://github.com/applicativesystem/rust-collision-algorithm
hash collision free compression of genome
bioinformatics-algorithms collision-avoidance genome-compression graphs-algorithms suffix-automaton
Last synced: 23 Dec 2024
https://github.com/applicativesystem/rust-overlap-graph
rust overlap graph using btreemap
algorithms-and-data-structures algorithms-bioinformatics bioinformatics btree-implementation genome-assembly
Last synced: 23 Dec 2024
https://github.com/applicativesystem/rust-suffix-lcp-arrays
rust suffix lcp arrays
algorithms-and-data-structures algorithms-bioinformatics bioinformatics genome-algorithms-bioinformatics genome-bioinformatics genome-sequencing
Last synced: 23 Dec 2024
https://github.com/applicativesystem/go-alignment
a cloud native application for large scale phylogenomics
genome-alignment genome-alignment-utilites genome-analysis genome-annotation genomes-comparison phylogenomics phylogenomics-bioinformatics
Last synced: 20 Feb 2025
https://github.com/applicativesystem/fedora-devops
cloud native golang implementation for fedora devops
devops devops-tools fedora fedora-linux system-administration system-administration-tool system-programming
Last synced: 27 Feb 2025
https://github.com/applicativesystem/python-datastructure-algorithms
my approach of solving the leetcode, interviewcode and other questions
Last synced: 10 Jan 2025
https://github.com/applicativesystem/go-illumina-read-balancer
illumina read balancer for novaseq nextseq sequencing
bioinformatics genome-analysis illumina-sequencing nextseq novaseq
Last synced: 15 Jun 2025
https://github.com/applicativesystem/go-microrna-deep
a microRNA deep learning go package
bioinformatics deep-learning deep-neural-networks genome-analysis micrornas neural-networks
Last synced: 03 Apr 2025
https://github.com/applicativesystem/tkinter-sqlite-genome-database
a tkinter sqlite genome database for storing bacterial, fungal and plant pangenomes and genomes
Last synced: 03 Apr 2025