https://github.com/applicativesystem/rust-pangenome

rust pangenome for pangenome alignments

bioinformatics genome-analysis metagenomics metagenomics-data rust-lang

Last synced: 12 Apr 2025

https://github.com/codebiogenomics/machine-learning-expression-sequence

sequence and expression based machine learning

bioinformatics expression-analysis genome-analysis genome-features genome-informatics machine-learning machinelearning sequence-features

Last synced: 15 Aug 2025

https://github.com/applicativesystem/go-alignment-proportion

golang for estimating the genome site proportion

alignment-algorithms alignments bioinformatics genome-analysis genome-analysis-annotation phylogenetic-analysis phylogenetic-comparative-methods phylogenomics phylogenomics-bioinformatics

Last synced: 30 Oct 2025

https://github.com/applicativesystem/go-alignment-estimate

a block basis estimate of the whole genome alignment estimates

alignment-algorithm alignment-strategies bioinformatics genome-alignments genome-alignments-bioinfromatics genome-analysis phylogenmics-golang phylogenomics phylogenomics-bioinformatics

Last synced: 03 Apr 2025

https://github.com/applicativesystem/microrna-deep

a microRNA set of rules for deep learning from ruby, python, golang and javascript

Last synced: 22 Aug 2025

https://github.com/applicativesystem/go-pacbiohifi

profiling pacbiokmers and filtering pacbio kmers

bioinformatics golang golang-library pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi

Last synced: 03 Apr 2025

https://github.com/applicativesystem/view-pacbiohifi-awk

pacbiohifi view using awk

awk awk-programming-language awk-script bioinformatics-genome genome-analysis genome-bioinformatics genome-informatics pacbio pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing

Last synced: 03 Apr 2025

https://github.com/applicativesystem/go-proteinmmcif

(crystallographic) Protein Data Bank (PDB) and mmCIF files

Last synced: 16 Jun 2025

https://github.com/applicativesystem/multi-view-genome-annotations

viewing the plant, bacterial, fungal multigene genome annotations.

bioinformatics genome-analysis genome-annotation genome-informatics genome-visualziation rlanguage

Last synced: 03 Apr 2025

https://github.com/applicativesystem/pacbiohifi-sam-sort

go driven pacbiohifi sam sort for browser requests and caching

bioinformatics pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing

Last synced: 03 Apr 2025

https://github.com/applicativesystem/go-pacbiohifi-visualization

streaming visualization of pacbiohifi reads

bioinformatics genome-analysis genome-informatics pacbio-hifi-sequencing-reads pacbio-sequencing

Last synced: 29 Jun 2025

https://github.com/applicativesystem/go-alignment-block-genotyper-edna

desining block alignment geneotyper tags based on the whole genome alignment or gene alignment for phylogenomics

bioinformatics edna environmental-dna genome-analysis genotyping-by-sequencing golang-application hybseq-data

Last synced: 03 Apr 2025

https://github.com/applicativesystem/devops-system-profiler

ruby gem for profiling devops on systems or hpc

cluster devops devops-tools ruby-gem rubygems

Last synced: 03 Apr 2025

https://github.com/applicativesystem/go-alignment-block-estimate

estimate blocks alignment stats

bioinformatics bioinformatics-tool genome-alignment genome-alignment-bioinformatics genome-analysis golang-package phylogenomics phylogenomics-bioinformatics

Last synced: 03 Apr 2025

https://github.com/applicativesystem/go-ldap

streaming ldap servers using golang

devops-platform devops-tools golang-package high-performance-computing ldap-authentication ldap-client ldap-library

Last synced: 03 Apr 2025

https://github.com/applicativesystem/conda-slint-ui

a slint UI interface to conda and anaconda packages

anaconda anaconda3 computing-cluster conda devops devops-team devops-tools high-performance-computing

Last synced: 03 Apr 2025

https://github.com/applicativesystem/go-multi-longread-canvas

multipattern trimmomatic for long reads

bioinformatics bioinformatics-algorithms genome-sequencing nanopore-sequencing pacbio-hifi-sequencing-reads pacbio-sequencing

Last synced: 03 Apr 2025

https://github.com/applicativesystem/docker-ruby

ruby class for docker

devops devops-tools docker ruby ruby-gem

Last synced: 03 Apr 2025

https://github.com/applicativesystem/go-metagenome-placer

metegnome sequence extractions from MAGs

bacterial-genome-analysis bacterial-genomes metagenomes metagenomics metagenomics-data metagenomics-toolkit

Last synced: 03 Apr 2025

https://github.com/applicativesystem/github-json

github address cloner, parses github json and make the clone link.

devops devops-github devops-tech-enablement devops-tool github github-actions github-api github-config

Last synced: 03 Apr 2025

https://github.com/applicativesystem/gfa-fasta

taking a gfa aligned file and writing a fasta file

Last synced: 03 Apr 2025

https://github.com/applicativesystem/go-diamond-sequence-hints

extracting the aligned portions from the diamond aligner by read alignment of pacbio reads to the proteins.

bioinformatics bioinformatics-data genome-analysis genome-annotation genomealignment genomeannotation

Last synced: 03 Apr 2025

https://github.com/applicativesystem/genome-annotation-viisualizer

viewing the plant, bacterial, fungal genome annotations.

bioinformatics bioinformatics-scripts genome-analysis genome-informatics genome-visualization python3

Last synced: 03 Apr 2025

https://github.com/applicativesystem/genome-size-estimates

estimating the genome size from illumina genome-seq and plotting the genome size.

bioinformatics genome-analysis genome-size genome-size-estimation illumina illumina-sequencing rlanuage rscript

Last synced: 03 Apr 2025

https://github.com/applicativesystem/ensembl-plants

bash based api fetcher from ensemble

Last synced: 03 Apr 2025

https://github.com/applicativesystem/go-diamond-tags

metacoverage estimation and tags generation from diamond aligner

genome-analysis genome-analysis-annotation genome-annotation metagenome-annotation metagenome-assembled-genomes metagenome-assembly

Last synced: 03 Apr 2025

https://github.com/applicativesystem/rust-longread-storage

rustlang longread genome storage application

Last synced: 03 Apr 2025

https://github.com/applicativesystem/github-extender

easy of use github cli actions for github repositories and clones

devops devops-github devops-team devops-tools github github-actions github-api

Last synced: 03 Apr 2025

https://github.com/applicativesystem/bacterial-insertion-element

string based approach to check for the instertion element in bacterial genomes

bacterial-genome-analysis bacterial-genome-sequence bacterial-genomes genome-analysis insertion-elements metagenomes

Last synced: 03 Apr 2025

https://github.com/applicativesystem/bcftools-utility

bactools-utility for dealing with bcf files

bcf bioinformatics genome-alignment genome-alignment-utilites genome-alignments genome-analysis genome-bioinformatics genome-informatics

Last synced: 03 Apr 2025

https://github.com/applicativesystem/expression-neural-network

fitting neural network on a unbalanced expression dataset

bioinformatics deep-learning deepneural-network expression genome-analysis genome-informatics neural-network

Last synced: 03 Apr 2025

https://github.com/applicativesystem/seagrass-health

a multipage golang application for seagrass health

bioinformatics genome-analysis gohttp golang seagrass-detection template-engine

Last synced: 03 Apr 2025

https://github.com/applicativesystem/protein-alignment

protein alignment gem from alignment to graphs

bioinformatics genome-alignment genome-analysis genome-anntoation-analysis genome-protein-alignment protein-alignment protein-annotation-analysis ruby rubylang rubylanguage

Last synced: 03 Apr 2025

https://github.com/applicativesystem/svm-bacterial-tolerance

a bacterail tolerance estimation using support vector machine

bioinformatics genome-analysis genome-annotation machine-learning support-vector-machine-learning support-vectore-machines

Last synced: 03 Apr 2025

https://github.com/applicativesystem/go-telomeres-graph

kmer density based telomeres searching and profling

bioinformatics genome-analysis genome-annotation reassembly telomere telomeres telomeric

Last synced: 03 Apr 2025

https://github.com/applicativesystem/pbs-altair-pro

a bash based implementation of pbs-pro altair

computing-cluster devops devops-tools pbs pbs-torque

Last synced: 03 Apr 2025

https://github.com/applicativesystem/go-apptainer-devops

a apptainer golang devops

apptainer apptainer-container devops devops-tools golang golang-package system-administration system-programming

Last synced: 03 Apr 2025

https://github.com/applicativesystem/plant-microarray-analysis

plant microarrya analysis from expression datasets

bioinformatics genome-analysis microarray microarray-analysis microarray-data microarray-data-analysis

Last synced: 03 Apr 2025

https://github.com/applicativesystem/conda-fetcher

a conda fetcher interacts with anaconda package builder

anaconda anaconda3 conda conda-build devops devops-build devops-team devops-tools

Last synced: 03 Apr 2025

https://github.com/applicativesystem/go-goannotate

golang annotation for genome annotation.

bioinformatics genestructure genome-analysis genome-annotation genome-annotation-analyzer gff gff3-format gff3-tools golang golang-package graphics-package

Last synced: 06 Jul 2025

https://github.com/applicativesystem/builder-conda

a conda builder and search written using shell

anaconda anaconda3 conda conda-build conda-environment devops devops-team devops-tools

Last synced: 03 Apr 2025

https://github.com/applicativesystem/go-alignment-block-getter

alignment block getter for getting blocks of alignment from specific alignments

bioinformatics evolutionary-computation genome-alignment genome-analysis genome-sequencing golang-package phylogenomics phylogenomics-bioinformatics phylogenomics-golang

Last synced: 17 Jun 2025

https://github.com/applicativesystem/seagrass-functional

a streamlit application for seagrass functional health monitoring

bioinformatics genome-analysis seagrass seagrass-detection streamlit-application streamlit-webapp

Last synced: 21 Jun 2025

https://github.com/applicativesystem/go-gffread

complete golang gff read package

bioinformatics genome-annotation gff-toolkit gff3-format golang-package

Last synced: 11 Jul 2025

https://github.com/applicativesystem/bash-based-otu-plotter

bash based metagenomics otu plotter before analysis

bioinformatics genome-analysis metagenomics metagenomics-counts metagenomics-data

Last synced: 03 Apr 2025

https://github.com/applicativesystem/go-reference-alignment-estimate

estimate the alignment stats based on a selected reference genome or gene sequence from the alignment

bioinformatics evolutionary-biology evolutionary-computation genome-alignment-bioinformatics phylogenomics phylogenomics-bioinformatics phylogenomics-golang whole-genome-sequencing

Last synced: 22 Jul 2025

https://github.com/applicativesystem/go-illumina-read-balancer

illumina read balancer for novaseq nextseq sequencing

bioinformatics genome-analysis illumina-sequencing nextseq novaseq

Last synced: 13 Jul 2025

https://github.com/applicativesystem/rust-jump-search-suffix-arrays

rust-jump-search-suffix-arrays searching suffix tres and graphs using the jump search

Last synced: 24 Feb 2025

https://github.com/applicativesystem/python-datastructure

my approach of solving the leetcode, interviewcode and other questions

data-structures python-3

Last synced: 29 Jul 2025

https://github.com/applicativesystem/go-wiggle-tools

golang implementation of wiggle tools compression based algorithm

Last synced: 31 Jul 2025

https://github.com/applicativesystem/rust-view-aln-wasm

rust embedded approach for genome alignments to wasm web assembly

bioinformatics genome-analysis genome-assembly genome-browser rust-crate rustlang webassembly webassembly-lang

Last synced: 01 Aug 2025

https://github.com/applicativesystem/rust-samtools-generateid-range

rust-samtools generateid range

bioinformatics genome-alignment genome-analysis genome-sequence-analysis indexeddb rust-lang samtools

Last synced: 03 Aug 2025

https://github.com/applicativesystem/go-nuc-iter

golang nuc-iteration

bioinformatics genome-analysis genome-analysis-annotation genome-assembly genome-informatics

Last synced: 10 Aug 2025

https://github.com/codebiogenomics/pansam

all rust-samtools combined into a single application

Last synced: 15 Aug 2025

https://github.com/applicativesystem/tair-pubmed-connect

tair id to pubmed links for articls, genes, annotations, locus tag

genome-analysis genome-annotation literature-modelling ncbi ncbi-database ncbi-sra pubmed pubmed-literature tair tair3 topic-analysis

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-fastp-clipall

rust-fastp-clipall

Last synced: 15 Aug 2025

https://github.com/applicativesystem/numpy-builder

code getter and numpty operator for numpy operations

data-analysis numpy numpy-python shell-script

Last synced: 15 Aug 2025

https://github.com/applicativesystem/sqlite3-genome

python implementation of sqlite3 for genome assembly

bioinformatics database-management database-migrations genome-analysis python-app python3 sqlite3 sqlite3-database

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-pangenome-matcher

rust pangenome matcher

bioinformatics genome-alignment genome-analysis genome-bioinformatics pangenome-alignment pangenomic-analysis pangenomics

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-fastp-clip

rust-fastp-clip

Last synced: 15 Aug 2025

https://github.com/applicativesystem/miniprot-analyzer

miniprot protein analyzer

bioinformatics genome-analysis genome-annotation protein-alignment protein-alignments protein-sequences

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-samtools-extractor

rust samtools extractor

bioinformatics-algorithms bioinofrmatics genome-alignment genome-analysis genome-bioinformatics genome-sequencing

Last synced: 15 Aug 2025

https://github.com/applicativesystem/plant-resistance-gene-isolator

functional gene assembly of plant resistance genes

bioinformatics genome-analysis genome-anntoation-analysis genome-informatics plant-disease plant-disease-detection plant-genes plant-resistance-genes resistance-gene-genome resistance-genes

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-bwt-algorithm

rust implementation of Burrows-Wheeler transform

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-pangenome-harmonic-mean

rust pangenome harmonic mean

bioinformatics genome-bioinformatics pangenome pangenome-alignment pangenome-inference

Last synced: 15 Aug 2025

https://github.com/applicativesystem/mrna-plotter

plotting and summary information tools for the mRNA proteome to genome alignments.

bioifnormatics bioinformatics-genome-informatics bioinformatics-scripts genome-analysis genome-annotation genome-sequencing transcriptome-annotation

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-de-bruijn-graphs

construction, reading of colored ompacted de Bruijn graphs

Last synced: 15 Aug 2025

https://github.com/applicativesystem/tair-gff-ids-analyzer

ease of access gff files from tair for reading tair ids.

arabidopsis arabidopsis-thalian bioinformatics genome-analysis genome-annotation genome-informatics gff gff-toolkit gff3 tair tair3

Last synced: 15 Aug 2025

https://github.com/applicativesystem/miseq-nextseq-novaseq-assembly

quality control, genome assembly, mapping for miseq, novaseq and nextseq reads

bioinformatics genome-assembly genome-sequencing illumina illumina-sequencing miseq nextseq

Last synced: 15 Aug 2025

https://github.com/codebiogenomics/plant-resistance-gene-fetcher

plant resistance gene analyzer for getting the dna and protein sequences.

genome-analysis genome-annotation plant-disease plant-disease-detection plant-monitoring plant-resistance-genes resistance-genes

Last synced: 15 Aug 2025

https://github.com/applicativesystem/sra-explorer

explore sra databases and sequence retrieval

bioinformatics ncbi ncbi-database ncbi-sra shell shell-script sra sratoolkit

Last synced: 15 Aug 2025

https://github.com/applicativesystem/phylogenomics-apptainer

apptainer image for complete phylogenomics and evolutionary analysis

apptainer apptainer-container devops devops-platform devops-team high-performance-computing phylogenomics phylogenomics-bioinformatics

Last synced: 15 Aug 2025

https://github.com/applicativesystem/apptainer-images

apptainer-images for the machine learning coding potential

apptainer apptainer-container devops-platform devops-tools high-performance-computing

Last synced: 15 Aug 2025

https://github.com/applicativesystem/arabidopsis-api-analyzer

easing your access to arabidopsis tair

api arabidopsis arabidopsis-thaliana genome-analysis genome-annotation genome-sequencing tair tair3

Last synced: 15 Aug 2025

https://github.com/codebiogenomics/pubmed-analyzer

analyzing pubmed articles for natural language processing.

bioinformatics genome-analysis language-model language-processing literature-management literature-mining pubmed python3

Last synced: 15 Aug 2025

https://github.com/applicativesystem/langchain-application

a langchain literature miner from pubmed

bioinformatics genome-analysis genome-bioinformatics genome-informatics langchain langchain-python literature-analysis literature-mining literature-search nacbi-pubmed ncbi pubmed

Last synced: 15 Aug 2025

https://github.com/applicativesystem/lastz-awk

analyzing lastz alignments using awk

awk awk-programming-language awk-script bioinformatics bioinformatics-genome genome-alignments-bioinfromatics genome-genome-alignment genome-protein-alignment lastz

Last synced: 17 Aug 2025

https://github.com/applicativesystem/rust-overlap-graph

rust overlap graph using btreemap

algorithms-and-data-structures algorithms-bioinformatics bioinformatics btree-implementation genome-assembly

Last synced: 25 Aug 2025

https://github.com/applicativesystem/rust-suffix-lcp-arrays

rust suffix lcp arrays

algorithms-and-data-structures algorithms-bioinformatics bioinformatics genome-algorithms-bioinformatics genome-bioinformatics genome-sequencing

Last synced: 25 Aug 2025

https://github.com/applicativesystem/rust-collision-algorithm

hash collision free compression of genome

bioinformatics-algorithms collision-avoidance genome-compression graphs-algorithms suffix-automaton

Last synced: 25 Aug 2025

https://github.com/genomicssport/enafetch

rustlang implementation for accessing ena for any datasets.

bioinformatics european-nucleotide-archive genome-analysis rust-crate rust-lang

Last synced: 22 Sep 2025

https://github.com/applicativesystem/hashicorp-initiator

hashicorp terraform instance creator

devops devops-platform devops-tools hashicorp hashicorp-terraform

Last synced: 26 Feb 2025

https://github.com/genomicssport/rust-serverless

a rustlang multiconnect high performance computing

high-performance-computing rust-crate rust-lang server-side server-side-rendering system-administration system-programming

Last synced: 22 Sep 2025

https://github.com/applicativesystem/short-long-read-alignment-codegetter

codegetter for illumina, pacbio and oxford long read and short reads

bioinformatics genome-analysis illumina illumina-sequencing pacbio-hifi-sequencing-reads pacbio-sequencing shell shellscript

Last synced: 11 May 2025

https://github.com/applicativesystem/go-expression-analyzer

a map to read expression analyzer for cloud native expression analysis

expression-evaluator genome-analysis golang golang-package metagenomics-counts transcriptome-analysis

Last synced: 04 Jul 2025

https://github.com/applicativesystem/rust-samtools-genomeview

rust-samtools-genomeview

bioinformatics genome-alignments genome-analysis genome-bioinformatics genome-capture genome-sequencing

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-alignment-viewer

rust embedded approach for genome alignments

bioinformatics genome-alignment genome-analysis rust-crate rust-lang

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-samtools-generateid

rust-samtools generateid

bioinformatics genome-alignment genome-analysis genome-bioinformatics genome-sequence-analysis genome-sequencing samtools

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-fastp-clip-base

rust fastp quality drop

bioinformatics genome-analysis genome-sequencing illumina illumina-sequencing

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-connect

a rustlang devops/system administration application

cluster-computing high-performance-computing rust-library slurm-job-scheduler slurm-workload-manager system-administration system-programming

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-deeplearning-alignment

vector preparation for deep learning for masked alignment prediction

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-fastp-sync

rustic version of fastp each fastp subcommand in a separate multithreaded application

bioinformatics bioinformatics-analysis genome-analysis genome-sequencing illumina illumina-sequencing

Last synced: 15 Aug 2025

https://github.com/applicativesystem/go-system-backup-program

golang system backend application

backend golang-package high-performance-computing server-side-rendering system-programming systembackup

Last synced: 03 Apr 2025

https://github.com/codebiogenomics/trinity-analyzer

from trinity assembly to deep learning

genome-analysis genome-annotation transcriptome-annotation transcriptome-assembly trinity

Last synced: 15 Aug 2025

https://github.com/applicativesystem/go-genomesummarizer

golang genome summarizer and implements a linear algebra

bioinformatics bioinformatics-analysis genome-analysis genome-annotation genome-assembly golang

Last synced: 03 Apr 2025

https://github.com/applicativesystem/applicativesystem

Gaurav Sablok README

Last synced: 15 Aug 2025

https://github.com/applicativesystem/snakemake-utility

bash based utility for writing the snakemake iteration

bioinformatics genome-analysis shell-script snakemake snakemake-pipeline snakemake-wrappers

Last synced: 03 Apr 2025

https://github.com/applicativesystem/semantic-ontologies

generating the ontology graphs and the system relationship.

bioinformatics genome-analysis genome-annotation genome-annotation-analysis ontologies ontology ontology-alignment ontology-search

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-pangenome-snatcher

rust pangenome snatcher

bioinformatics genome-analysis genome-analysis-annotation pangenome pangenome-analysis pangenome-inference

Last synced: 15 Aug 2025

https://github.com/applicativesystem/rust-fastp-clipped

rust implementation of the tilled window approach

bioinformatics bioinformatics-analysis bioinformatics-data genome-analysis genome-annotation illumina-sequencing

Last synced: 15 Aug 2025