Projects in Awesome Lists tagged with genome-informatics

https://github.com/applicativesystem/ml-expression-sequence

sequence and expression based machine learning

bioinformatics expression-analysis genome-analysis genome-features genome-informatics machine-learning machinelearning sequence-features

Last synced: 16 Dec 2024

https://github.com/codecreatede/genome-dataultilities

genome scale analysis using command bash

bash-script bash-scripting genome-analysis genome-assembly-utilities genome-informatics genome-utilities shell shell-script

Last synced: 31 Oct 2024

https://github.com/codecreatede/rust-genome-longread-count

datastructure rustlang faster iteration for genome, short and long reads

bioinformatics genome-classification genome-informatics rust-crate rust-lang sequence-classification sequencing-data

Last synced: 05 Nov 2024

https://github.com/applicativesystem/rust-genome-longread-count

datastructure rustlang faster iteration for genome, short and long reads

bioinformatics genome-classification genome-informatics rust-crate rust-lang sequence-classification sequencing-data

Last synced: 14 Nov 2024

https://github.com/codecreatede/mongodb-genome

a mongodb implementation for pacbiohifi genome and genome annotation

bioinformatics database database-management database-schema genome-analysis genome-bioinformatics genome-informatics mongodb mongodb-database python3

Last synced: 22 Nov 2024

https://github.com/applicativesystem/view-pacbiohifi-awk

pacbiohifi view using awk

awk awk-programming-language awk-script bioinformatics-genome genome-analysis genome-bioinformatics genome-informatics pacbio pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing

Last synced: 16 Dec 2024

https://github.com/applicativesystem/tair-gff-ids-analyzer

ease of access gff files from tair for reading tair ids.

arabidopsis arabidopsis-thalian bioinformatics genome-analysis genome-annotation genome-informatics gff gff-toolkit gff3 tair tair3

Last synced: 16 Dec 2024

https://github.com/applicativesystem/paf-analyzer-awk

analyzing paf alignments using awk

awk awk-programming-language bioinformatics bioinformatics-genome genome-alignments genome-analysis genome-informatics paf

Last synced: 16 Dec 2024

https://github.com/applicativesystem/multi-view-genome-annotations

viewing the plant, bacterial, fungal multigene genome annotations.

bioinformatics genome-analysis genome-annotation genome-informatics genome-visualziation rlanguage

Last synced: 16 Dec 2024

https://github.com/applicativesystem/pangenome-metagenomics

pangenome metagenomics normlization for specific ids

bioinformatics genome-analysis genome-annotation genome-informatics metagenomics metagenomics-binning metagenomics-counts metagenomics-data

Last synced: 16 Dec 2024

https://github.com/applicativesystem/pacbiohifi-awk

awk utilites for anlyzing pacbiohifi genomes and reads

awk awk-programming-language awk-script bioifnormatics-genome bioinformatics genome-analysis genome-informatics pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi

Last synced: 16 Dec 2024

https://github.com/applicativesystem/plant-resistance-gene-isolator

functional gene assembly of plant resistance genes

bioinformatics genome-analysis genome-anntoation-analysis genome-informatics plant-disease plant-disease-detection plant-genes plant-resistance-genes resistance-gene-genome resistance-genes

Last synced: 16 Dec 2024

https://github.com/applicativesystem/slurm-pbs-genome

slurm pbs based genome analysis utilities

bioinformatics genome-alignment genome-analysis genome-annoation-analysis genome-annotation genome-informatics slurm slurm-cluster

Last synced: 16 Dec 2024

https://github.com/applicativesystem/metabolic-json

a metabolic json parser and streamlit for BIGG database

bioinformatics genome-analysis genome-bioinformatics genome-informatics json json-api json-data metabolic-models metabolic-pathways metabolic-reconstruction

Last synced: 16 Dec 2024

https://github.com/applicativesystem/miniprot-protein-annotator

miniprot protein alignment analyzer

bioinformatics genome-alignment genome-analysis genome-annotation genome-bioinformatics genome-informatics protein-alignment

Last synced: 16 Dec 2024

https://github.com/applicativesystem/go-nuc-iter

golang nuc-iteration

bioinformatics genome-analysis genome-analysis-annotation genome-assembly genome-informatics

Last synced: 16 Dec 2024

https://github.com/applicativesystem/go-pacbiohifi-visualization

streaming visualization of pacbiohifi reads

bioinformatics genome-analysis genome-informatics pacbio-hifi-sequencing-reads pacbio-sequencing

Last synced: 16 Dec 2024

https://github.com/applicativesystem/genome-estimates

estimates genomes size using the flow cytometry

bioinformatics bioinformatics-scripts flowcytometry genome genome-analysis genome-informatics

Last synced: 16 Dec 2024

https://github.com/applicativesystem/genome-annotation-viisualizer

viewing the plant, bacterial, fungal genome annotations.

bioinformatics bioinformatics-scripts genome-analysis genome-informatics genome-visualization python3

Last synced: 16 Dec 2024

https://github.com/applicativesystem/genome-dataultilities

genome scale analysis using command bash

bash-script bash-scripting genome-analysis genome-assembly-utilities genome-informatics genome-utilities shell shell-script

Last synced: 16 Dec 2024

https://github.com/applicativesystem/coding-plotter

plotting and summary tools for the protein to genome alignments for genome annotations.

bioinformatics bioinformatics-genome genome-annotation genome-annotation-analyzer genome-informatics genome-protein-alignments

Last synced: 16 Dec 2024

https://github.com/applicativesystem/domain-graphs

extracting and analyzing interpro domains for domain based graphs

bioinformatics genome-analysis genome-annotation-analysis genome-domains genome-informatics interpro interpro-domains

Last synced: 16 Dec 2024

https://github.com/applicativesystem/expression-neural-network

fitting neural network on a unbalanced expression dataset

bioinformatics deep-learning deepneural-network expression genome-analysis genome-informatics neural-network

Last synced: 16 Dec 2024

https://github.com/applicativesystem/bcftools-utility

bactools-utility for dealing with bcf files

bcf bioinformatics genome-alignment genome-alignment-utilites genome-alignments genome-analysis genome-bioinformatics genome-informatics

Last synced: 16 Dec 2024

https://github.com/codecreatede/rust-nuc-iter

datastructure rustlang faster iteration for genome, short and long reads

bioinformatics genome-classification genome-informatics rust-crate rust-lang sequence-classification sequencing-data

Last synced: 26 Oct 2024

https://github.com/applicativesystem/langchain-application

a langchain literature miner from pubmed

bioinformatics genome-analysis genome-bioinformatics genome-informatics langchain langchain-python literature-analysis literature-mining literature-search nacbi-pubmed ncbi pubmed

Last synced: 16 Dec 2024