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Projects in Awesome Lists tagged with pacbio-hifi-sequencing-reads

A curated list of projects in awesome lists tagged with pacbio-hifi-sequencing-reads .

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https://github.com/nschan/nf-genomeassembly

Nextflow pipeline to assemble genomes from long reads.

annotation arabidopsis arabidopsis-thaliana genome genome-assembly genome-sequencing hifi long-read-sequencing long-reads nanopore nextflow nextflow-pipeline nextflow-pipelines oxford-nanopore pacbio pacbio-hifi-sequencing-reads scaffolding

Last synced: 06 Nov 2024

https://github.com/gauravcodepro/genomeassembly-pacbiohifi

PacbioHifi genome assembly benchmarks

bioinformatics genome-assembly pacbio-hifi-sequencing-reads pacbio-sequencing pacbioreadsconnection protoype

Last synced: 09 Nov 2024

https://github.com/gauravcodepro/alignments-code-generator

a shell code getter for genomics alignments for the illumina and long reads from pacbio and the oxfordnanopore

illumina illumina-sequencing oxford-nanopore pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing

Last synced: 09 Nov 2024

https://github.com/applicativesystem/short-long-read-alignment-codegetter

codegetter for illumina, pacbio and oxford long read and short reads

bioinformatics genome-analysis illumina illumina-sequencing pacbio-hifi-sequencing-reads pacbio-sequencing shell shellscript

Last synced: 17 Nov 2024

https://github.com/applicativesystem/go-pacbiohifi

profiling pacbiokmers and filtering pacbio kmers

bioinformatics golang golang-library pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi

Last synced: 16 Dec 2024

https://github.com/applicativesystem/view-pacbiohifi-awk

pacbiohifi view using awk

awk awk-programming-language awk-script bioinformatics-genome genome-analysis genome-bioinformatics genome-informatics pacbio pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing

Last synced: 16 Dec 2024

https://github.com/applicativesystem/pacbiohifi-awk

awk utilites for anlyzing pacbiohifi genomes and reads

awk awk-programming-language awk-script bioifnormatics-genome bioinformatics genome-analysis genome-informatics pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi

Last synced: 16 Dec 2024

https://github.com/applicativesystem/pacbiohifi-desktop

a streamlit application for graphical analyisis of pacbiohifi reads

bioinformatics bioinformatics-analysis genome-analysis pacbio pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi sequencing-analysis sequencing-data

Last synced: 16 Dec 2024

https://github.com/applicativesystem/pacbio-nanopore-polyatgc-remove

polyATGC pacbio/oxford nanopore estimator

bioinformatics genome-analysis genome-annotation pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing pacbiohifi

Last synced: 16 Dec 2024

https://github.com/applicativesystem/pacbiohifi-sam-sort

go driven pacbiohifi sam sort for browser requests and caching

bioinformatics pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing

Last synced: 16 Dec 2024

https://github.com/applicativesystem/pacbiohifi-read-analyzer

pacbiohifi read analyzer using recursion

bioinformatics bioinformatics-tool pacbio pacbio-data pacbio-hifi-sequencing-reads pacbiohifi

Last synced: 16 Dec 2024

https://github.com/applicativesystem/pacbio-nanopore-repeat-coverage

pacbio/oxford nanopore long reads repeat coverage estimation

bioinformatics genome-analysis genome-assembly pacbio pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing

Last synced: 16 Dec 2024

https://github.com/applicativesystem/go-multi-longread-canvas

multipattern trimmomatic for long reads

bioinformatics bioinformatics-algorithms genome-sequencing nanopore-sequencing pacbio-hifi-sequencing-reads pacbio-sequencing

Last synced: 16 Dec 2024

https://github.com/applicativesystem/go-pacbiohifi-visualization

streaming visualization of pacbiohifi reads

bioinformatics genome-analysis genome-informatics pacbio-hifi-sequencing-reads pacbio-sequencing

Last synced: 16 Dec 2024

https://github.com/applicativesystem/go-longread-canvas

trimmomatic for long reads

bioinformatics genome-analysis genome-annotation oxford-nanopore pacbio-data pacbio-hifi-sequencing-reads pacbio-sequencing

Last synced: 16 Dec 2024