Projects in Awesome Lists by nschan
A curated list of projects in awesome lists by nschan .
https://github.com/nschan/nf-plotsv
Compare genomes using minimap2, SyRi and plotsr in a nextflow pipeline
Last synced: 17 Feb 2025
https://github.com/nschan/nf-genomeassembly
Nextflow pipeline to assemble genomes from long reads.
annotation arabidopsis arabidopsis-thaliana genome genome-assembly genome-sequencing hifi long-read-sequencing long-reads nanopore nextflow nextflow-pipeline nextflow-pipelines oxford-nanopore pacbio pacbio-hifi-sequencing-reads scaffolding
Last synced: 17 Feb 2025
https://github.com/nschan/syri_gggenomes
Plot SyRi output via gggenomes
genomics-visualization gggenomes ggplot2 syri
Last synced: 15 May 2025
https://github.com/nschan/knoch_et_al_transcriptomes
Scripts and files for the transcriptome analysis for Knoch et al., 2022
Last synced: 15 May 2025
https://github.com/nschan/16s_metagenomics_coursefiles
A public version of the teaching repository, scrubbed to not include the actual data.
Last synced: 15 May 2025
https://github.com/nschan/pca_visual
This repository contains a visual approach to Principal Component Analysis of more than three vectors
Last synced: 15 May 2025