Ecosyste.ms: Awesome

An open API service indexing awesome lists of open source software.

Awesome Lists | Featured Topics | Projects

Projects in Awesome Lists tagged with arabidopsis

A curated list of projects in awesome lists tagged with arabidopsis .

- Recently synced
- Stars

https://github.com/gregor-mendel-institute/snpmatch

A simple python library to identify the most likely strain from the population

1001genomes arabidopsis arageno genotype genotyping genotyping-by-sequencing pipeline snpmatch snps

Last synced: 06 Nov 2024

https://github.com/nschan/nf-genomeassembly

Nextflow pipeline to assemble genomes from long reads.

annotation arabidopsis arabidopsis-thaliana genome genome-assembly genome-sequencing hifi long-read-sequencing long-reads nanopore nextflow nextflow-pipeline nextflow-pipelines oxford-nanopore pacbio pacbio-hifi-sequencing-reads scaffolding

Last synced: 06 Nov 2024

https://github.com/gauravcodepro/tairaccession

tairaccession python package for interaction with tair and analyzing arabidopsis genome.

annotation-processor annotation-tool arabidopsis bioinformatics bioinformatics-tool comparative-analysis comparative-genomics genome-analysis genome-annotation phytozome plantgenomes plantgenomics tair3

Last synced: 09 Nov 2024

https://github.com/gauravcodepro/arabidopsis-api-tair

this repository contains a function which will make your access to tair datasets easier for the arabidopsis research. Run this function and it will run and download the arabidopsis datasets and make the required analysis. It will make all the dictionary with nested lists and tuples which will provide a easy access to the tair dataframe

annotation-processing annotation-processor annotations arabidopsis arabidopsis-thaliana genome-analysis genome-assembly tair tair3