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Projects in Awesome Lists tagged with arabidopsis
A curated list of projects in awesome lists tagged with arabidopsis .
https://github.com/gregor-mendel-institute/snpmatch
A simple python library to identify the most likely strain from the population
1001genomes arabidopsis arageno genotype genotyping genotyping-by-sequencing pipeline snpmatch snps
Last synced: 06 Nov 2024
https://github.com/nschan/nf-genomeassembly
Nextflow pipeline to assemble genomes from long reads.
annotation arabidopsis arabidopsis-thaliana genome genome-assembly genome-sequencing hifi long-read-sequencing long-reads nanopore nextflow nextflow-pipeline nextflow-pipelines oxford-nanopore pacbio pacbio-hifi-sequencing-reads scaffolding
Last synced: 06 Nov 2024
https://github.com/gauravcodepro/tairaccession
tairaccession python package for interaction with tair and analyzing arabidopsis genome.
annotation-processor annotation-tool arabidopsis bioinformatics bioinformatics-tool comparative-analysis comparative-genomics genome-analysis genome-annotation phytozome plantgenomes plantgenomics tair3
Last synced: 09 Nov 2024
https://github.com/gauravcodepro/arabidopsis-maf-cap-accessions
arabidopsis-maf-cap-accessions. genome extraction, alignments, visualization, phylogenomics, ancestral tree
arabidopsis arabidopsis-thaliana maf phylogeny phylogeny-plots visualization
Last synced: 09 Nov 2024
https://github.com/gauravcodepro/streamlit-arabidopsis-ontology-graphs
a streamlit application to interact with arabidopsis plant obo for graphviz and other functions
arabidopsis arabidopsis-thaliana bioinfomatics graphviz javascript streamlit-application streamlit-webapp
Last synced: 09 Nov 2024
https://github.com/rbpisupati/nf-snpmatch
Nextflow pipeline for SNPmatch (https://github.com/Gregor-Mendel-Institute/SNPmatch.git)
1001genomes arabidopsis arageno genotyping-by-sequencing nextflow snpmatch
Last synced: 06 Nov 2024
https://github.com/gauravcodepro/arabidopsis-api-tair
this repository contains a function which will make your access to tair datasets easier for the arabidopsis research. Run this function and it will run and download the arabidopsis datasets and make the required analysis. It will make all the dictionary with nested lists and tuples which will provide a easy access to the tair dataframe
annotation-processing annotation-processor annotations arabidopsis arabidopsis-thaliana genome-analysis genome-assembly tair tair3
Last synced: 09 Nov 2024