Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://github.com/parklab/xTea
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
illumina linked-reads mobile-element-insertion nanopore pacbio transposable-elements
Last synced: 15 May 2024
https://github.com/mortazavilab/TALON
Technology agnostic long read analysis pipeline for transcriptomes
oxford-nanopore pacbio transcript-quantification transcriptome
Last synced: 13 May 2024
https://github.com/chhylp123/hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
bioinformatics denovo-assembly genomics hifi-read pacbio
Last synced: 08 May 2024
https://github.com/fmalmeida/ngs-preprocess
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
bax2bam bioinformatics illumina nanopack nextflow ngs ngs-preprocess pacbio pacbio-ccs pipeline porechop reproducible-research reproducible-science trimgalore workflow
Last synced: 08 May 2024
https://github.com/Genetalks/gtz
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
bam compress compression compression-rate fastq fastq-compression gene genomic-data-compression gtx nanopore pacbio sam
Last synced: 08 May 2024
https://github.com/ruanjue/wtdbg2
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
alignment assembly nanopore pacbio
Last synced: 22 Apr 2024
https://github.com/chanzuckerberg/shasta
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
assembly de-novo dna long-read nanopore pacbio sequencing
Last synced: 05 Apr 2024
