Projects in Awesome Lists tagged with metabarcoding

A curated list of projects in awesome lists tagged with metabarcoding .

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https://github.com/torognes/vsearch

Versatile open-source tool for microbiome analysis

amplicon bioinformatics chimera clustering fasta fastq metabarcoding metagenomics microbiome search sequence-alignment

Last synced: 02 Apr 2026

https://github.com/benjjneb/dada2

Accurate sample inference from amplicon data with single nucleotide resolution

amplicon bioconductor bioinformatics metabarcoding metagenomics microbiome taxonomy

Last synced: 18 Feb 2026

https://github.com/benjjneb/decontam

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

amplicon bioinformatics contamination metabarcoding metagenomics microbiome

Last synced: 21 Feb 2026

https://github.com/grunwaldlab/metacoder

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

community-diversity cran hierarchical metabarcoding pcr r taxonomy trees

Last synced: 16 Dec 2025

https://github.com/pr2database/pr2database

Protist Ribosomal Reference database (PR2) - SSU rRNA gene database

18s-rrna database eukaryotes metabarcoding rrna taxonomy

Last synced: 29 Jul 2025

https://github.com/quadram-institute-bioscience/dadaist2

Dadaist2 🟨 Highway to R

16s amplicon-pipeline asv bioinformatics dada2 metabarcoding phyloseq taxonomy

Last synced: 26 Feb 2026

https://github.com/vmikk/nextits

A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio

eukaryotes fungi internal-transcribed-spacer its metabarcoding nextflow pacbio pipeline

Last synced: 06 Oct 2025

https://github.com/sam-k/seq-quality-trimming

Trimming Sanger sequencing reads by quality

dna genomics metabarcoding sequencing ta-cloning

Last synced: 19 Apr 2025

https://github.com/telatin/qax

Qiime2 Artifact eXtractor

artifacts bioconda bioinfo bioinformatics metabarcoding metadata qax qiime2 qiime2-installation

Last synced: 30 Oct 2025

https://github.com/hulluni-bioinformatics/li_et_al_2019_edna_fish_monitoring

Data processing workflow and supplementary data for Li et al. 2019 - Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakes

edna lakes metabarcoding

Last synced: 19 Jan 2026

https://github.com/davidlougheed/snipe

A web tool for optimally choosing eDNA primer pairs to identify a set of taxa.

environmental-dna metabarcoding metabarcoding-data

Last synced: 23 Jan 2026

https://github.com/naturalis/barcode-constrained-phylogeny

Pipeline for building topologically-constrained phylogenies from DNA barcode data

dna-barcoding metabarcoding phylogenetic-diversity phylogenetic-placement phylogenetics

Last synced: 04 Apr 2026

https://github.com/widdowquinn/thapbi-pycits

Repository for ITS diagnostics development as part of Phytothreats project

bioinformatics classification computational-biology its1 metabarcoding

Last synced: 15 Mar 2026

https://github.com/naturalis/arise-metabarcoding-biodiversity

ARISE metabarcoding

arise hpc metabarcoding r

Last synced: 04 Apr 2026

https://github.com/icoia/microbiome_bioinformatics_analysis_2025

Metabarcoding and 16S rRNA Gene Sequencing (BIOF-Mic101)

16s dada2 metaanalysis metabarcoding microbiome microbiome-analysis microbiome-data statistical-analysis

Last synced: 26 Aug 2025

https://github.com/vmikk/soil_zoology_2021

Материалы мастер класса по анализу данных метабаркодинга (VII полевая школа по почвенной зоологии и экологии)

metabarcoding metazoa soil

Last synced: 05 Jan 2026