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Projects in Awesome Lists tagged with bioconda

A curated list of projects in awesome lists tagged with bioconda .

https://github.com/MultiQC/MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

analysis bioconda bioinformatics data-visualization multiqc pypi python quality-control reporting seqera vizualisation

Last synced: 13 Nov 2024

https://github.com/multiqc/multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

analysis bioconda bioinformatics data-visualization multiqc pypi python quality-control reporting seqera vizualisation

Last synced: 17 Dec 2024

https://github.com/fritzsedlazeck/sniffles

Structural variation caller using third generation sequencing

bioconda bioinformatics nanopore ngm-lr pacbio structural-variation structural-variations

Last synced: 19 Dec 2024

https://github.com/vanheeringen-lab/genomepy

genes and genomes at your fingertips

bioconda ensembl genome ncbi python ucsc

Last synced: 20 Dec 2024

https://github.com/bactopia/bactopia

A flexible pipeline for complete analysis of bacterial genomes

bacterial-genomes bioconda conda fastqs nextflow

Last synced: 13 Nov 2024

https://github.com/fritzsedlazeck/survivor

Toolset for SV simulation, comparison and filtering

bioconda bioinformatics comparison simulator structural-variations survivor vcf

Last synced: 16 Dec 2024

https://github.com/althonos/pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

bioconda bioinformatics cython-wrapper gene-finding genome metagenomes orf-finder prodigal python python-interface python-library simd

Last synced: 22 Dec 2024

https://github.com/telatin/seqfu2

:rocket: seqfu - Sequece Fastx Utilities

bioconda bioinformatics bioinformatics-tool fasta fastq genomics ngs sequencing

Last synced: 13 Nov 2024

https://github.com/clinical-genomics/chanjo

Chanjo provides a better way to analyze coverage data in clinical sequencing.

bioconda coverage genomics python sambamba sql

Last synced: 16 Dec 2024

https://github.com/ypriverol/containers-rules-manuscript

Recommendations to contenarized your bioinformatics software

bioconda biocontainers conda docker rkt

Last synced: 11 Oct 2024

https://github.com/MonashBioinformaticsPlatform/bioconda-tutorial

A quick overview of how to use Bioconda, and create recipes

bioconda bioinformatics tutorial

Last synced: 11 Nov 2024

https://github.com/bioconda/bioconda-paper

Data analysis related to the bioconda paper

analysis-workflows bioconda reproducibility snakemake

Last synced: 10 Nov 2024

https://github.com/quansight-labs/czi-conda-forge-mgmt

🚀 Top level project management for conda-forge CZI grant

bioconda conda-forge

Last synced: 18 Nov 2024

https://github.com/bioconda/bioconda-plots

Generating various plots for the bioconda homepage

bioconda plot

Last synced: 10 Nov 2024