Projects in Awesome Lists by bactopia
A curated list of projects in awesome lists by bactopia .
https://github.com/bactopia/bactopia
A flexible pipeline for complete analysis of bacterial genomes
bacterial-genomes bioconda conda fastqs nextflow
Last synced: 04 Apr 2026
https://github.com/bactopia/bactopia-py
A Python package for working with Bactopia
Last synced: 25 Apr 2026
https://github.com/bactopia/bactopia-tests
Contains data used by Bactopia for testing.
Last synced: 04 Apr 2026
https://github.com/bactopia/bactopia-assembler
The assembly process used by Bactopia.
Last synced: 04 Apr 2026
https://github.com/bactopia/bactopia-results
A repository for example result files generated by Bactopia
Last synced: 04 Apr 2026
https://github.com/bactopia/bactopia-variants
The SNP and InDel process used by Bactopia
Last synced: 04 Apr 2026
https://github.com/bactopia/bactopia-sketcher
Methods used by Bactopia for minmer sketching
Last synced: 04 Apr 2026
https://github.com/bactopia/bactopia-msystems-2020
Scripts and data associated with Bactopia publication in mSystems
Last synced: 04 Apr 2026
https://github.com/bactopia/bactopia-qc
The methods used in Bactopia for read QC
Last synced: 03 Apr 2026
https://github.com/bactopia/bactopia-teton
The taxonomic classification process used by Bactopia.
Last synced: 04 Apr 2026
https://github.com/bactopia/bactopia-gather
The methods used in Bactopia to gather all samples into one place
Last synced: 15 May 2026