Projects in Awesome Lists tagged with multiqc
A curated list of projects in awesome lists tagged with multiqc .
https://github.com/multiqc/multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
analysis bioconda bioinformatics data-visualization multiqc pypi python quality-control reporting seqera vizualisation
Last synced: 04 Mar 2026
https://github.com/MultiQC/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
analysis bioconda bioinformatics data-visualization multiqc pypi python quality-control reporting seqera vizualisation
Last synced: 05 May 2025
https://github.com/jhuapl-bio/taxtriage
TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.
classification metagenomics multiqc taxonomy triage
Last synced: 24 Apr 2026
https://github.com/multiqc/test-data
Test data for MultiQC.
bioinformatics bioinformatics-data multiqc test-data
Last synced: 27 Jan 2026
https://github.com/multiqc/example-plugin
A miniature example of a MultiQC plugin.
example-project multiqc multiqc-plugin next-generation-sequencing ngs plugin python quality-control
Last synced: 05 May 2025
https://github.com/angelovangel/nxf-fastqc
A simple fastp-MultiQC nextflow pipeline
fastq-files fastqc multiqc nextflow-pipelines ngs-pipeline
Last synced: 13 Feb 2026
https://github.com/gustaveroussy/rna-count-kallisto
Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto
bioinformatics conda fastqc json-schema kallisto multiqc reproducible-workflows snakemake snakemake-workflow
Last synced: 11 Feb 2026
https://github.com/becavin-lab/checkatlas
One liner tool to check the quality of your single-cell atlases.
control multiqc python quality scanpy seurat single-cell
Last synced: 09 Apr 2026
https://github.com/stevekm/dumpsoftwareversions
Create MultiQC Software Versions YAML from Nextflow pipeline output
Last synced: 16 May 2026
https://github.com/umccr/dracarys
:dragon_face: DRAGEN workflow tidying :fire:
cancer-genomics dragen multiqc qc r-package r6
Last synced: 16 Jan 2026
https://github.com/ineelhere/bioinformatics
Exploring Bioinformatics pipelines
bioinformatics fastqc multiqc nextflow rna-seq
Last synced: 13 Feb 2026
https://github.com/mahesh-panchal/nextflow-quarto-multiqc-demo
Using Quarto within Nextflow to make a MultiQC report
Last synced: 04 Feb 2026
https://github.com/stevekm/nf-niceutils
nice utility methods for Nextflow pipelines
multiqc nextflow nextflow-plugin
Last synced: 11 May 2026
https://github.com/tdayris/fair_bowtie2_mapping
Align reads over a reference genome, filter aligned-reads, and mark duplicates
bowtie2 multiqc sambamba snakemake snakemake-workflow snakemake-wrappers
Last synced: 16 Jan 2026
https://github.com/multiqc/api.multiqc.info
Code for basic MultiQC API service, providing run-time information about available updates.
Last synced: 08 May 2026
https://github.com/nuno-agostinho/multiqc-docker
Docker to run multiqc for combining bioinformatic log reports
bioinformatics docker logs multiqc
Last synced: 18 Aug 2025
https://github.com/sydney-informatics-hub/bamqc-nf
Report summary statistics relating to quality of bam files with Nextflow
alignment australian-biocommons bam bioinformatics genomics mosdepth multiqc nextflow ngs qualimap sambamba samtools
Last synced: 02 Jan 2026
