Projects in Awesome Lists tagged with reference-genome
A curated list of projects in awesome lists tagged with reference-genome .
https://github.com/refgenie/refgenieserver
Serves a web interface and RESTful API for reference genome assets.
api-server docker-container genome-assembly reference-genome
Last synced: 25 Feb 2026
https://github.com/standage/genhub
Explore eukaryotic genome composition and organization with iLoci
annotation genome iloci reference-genome
Last synced: 14 Jan 2026
https://github.com/tseemann/polyfix
🔪⛓️ Repair nanopore assemblies using related genome(s)
correction genome-assembly indel-finder nanopore-sequencing reference-genome
Last synced: 22 Aug 2025
https://github.com/refgenie/refgenconf
A Python object for standardized reference genome assets.
pythonapi reference-genome refgenie
Last synced: 25 Jul 2025
https://github.com/fulcrumgenomics/ref-solver
Identify which human reference genome was used to align a BAM/SAM/CRAM file
bam bioinformatics cram genomics grch37 grch38 hg19 hg38 reference-genome rust sam
Last synced: 17 Mar 2026
https://github.com/ctubbs750/snakemake-genome-bottle
Snakemake workflow to install reference genomes and their supporting files
gencode installer reference-genome snakemake-workflow
Last synced: 30 Apr 2025
https://github.com/sydney-informatics-hub/indexreferencefasta-nf
Create required reference genome index files for WGS data analysis
bioinformatics bwa docker fasta gatk4 genome genomics index nextflow pipeline reference-genome samtools singularity workflow
Last synced: 15 Mar 2025
https://github.com/giatraskon/chromosome11-variantcalling-gatk
A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.
1000genomes bam bcftools bioinformatics bwa exome-sequencing gatk gatk4-haplotypecaller genome-analysis haplotypecaller human-genome indels population-genetics reference-genome samtools snpeff snps variant-annotation variant-calling vcf
Last synced: 29 Jun 2025
