Projects in Awesome Lists tagged with bcftools

A curated list of projects in awesome lists tagged with bcftools .

- Recently synced
- Stars

https://github.com/scholl-lab/vcf-filtering

A collection of scripts for filtering annotated variant call format files

bcftools genetics kidney-disease rare-disease rare-variant-analysis snpeff snpsift vcf

Last synced: 18 Feb 2026

https://github.com/sdhutchins/vcf-prepping

Scripts used on a cluster that demonstrate vcf file manipulation and preparation.

bcftools exome-sequencing vcf wgs whole-genome-sequencing

Last synced: 26 Oct 2025

https://github.com/ozankiratli/filteringfalsepositives

This script filters false positive alleles from poolseq VCF file created with bcftools.

bcftools bioinformatics filtering

Last synced: 19 Jun 2025

https://github.com/giatraskon/chromosome11-variantcalling-gatk

A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.

1000genomes bam bcftools bioinformatics bwa exome-sequencing gatk gatk4-haplotypecaller genome-analysis haplotypecaller human-genome indels population-genetics reference-genome samtools snpeff snps variant-annotation variant-calling vcf

Last synced: 29 Jun 2025

https://github.com/jubayer98/vcf-toolkit

This repository outlines steps to manage VCF files, including compressing, indexing, querying chromosomes, counting variants, and comparing multiple VCF files using BCFTools.

bash-script bcftools

Last synced: 19 Jan 2026