Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists tagged with bcftools
A curated list of projects in awesome lists tagged with bcftools .
https://github.com/sdhutchins/vcf-prepping
Scripts used on a cluster that demonstrate vcf file manipulation and preparation.
bcftools exome-sequencing vcf wgs whole-genome-sequencing
Last synced: 22 Dec 2024
https://github.com/ozankiratli/filteringfalsepositives
This script filters false positive alleles from poolseq VCF file created with bcftools.
bcftools bioinformatics filtering
Last synced: 13 Nov 2024
https://github.com/giatraskon/chromosome11-variantcalling-gatk
A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.
1000genomes bam bcftools bioinformatics bwa exome-sequencing gatk gatk4-haplotypecaller genome-analysis haplotypecaller human-genome indels population-genetics reference-genome samtools snpeff snps variant-annotation variant-calling vcf
Last synced: 13 Dec 2024
https://github.com/jubayer98/vcf-toolkit
This repository outlines steps to manage VCF files, including compressing, indexing, querying chromosomes, counting variants, and comparing multiple VCF files using BCFTools.
Last synced: 19 Dec 2024
