Projects in Awesome Lists tagged with cutadapt
A curated list of projects in awesome lists tagged with cutadapt .
https://github.com/y9c/cutseq
✂️ Trim sequencing adapters from NGS data automatically
adapter barcode bioinformatics cutadapt dna-seq ngs rna-seq umi
Last synced: 06 May 2025
https://github.com/leooojr/reprohackathon
A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.
apptainer bash bowtie cli cutadapt deseq2 fastqc featurecounts google-cloud-platform hpc nextflow ngs-analysis ngs-pipeline r samtools shell sratoolkit ubuntu
Last synced: 07 May 2026
