https://github.com/digo4/Clinical-Genomics

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

bcftools bowtie2 bwa-mem cutadapt fastp fastqc freebayes gatk-bestpractices gatk-cnv gatk-joint-variant-calling-workflow gatk4 gatk4-haplotypecaller picard samtools trimgalore trimmomatic varscan

Last synced: 24 Jun 2026