Projects in Awesome Lists by jcaperella29
A curated list of projects in awesome lists by jcaperella29 .
https://github.com/jcaperella29/stock_evaluation_python
A Python script to classify companies based on financial metrics like Piotroski F-Score and Stock Valuation, using CSV financial data for analysis and output.
ai-in-finance artificial-intelligence classification csv-processing data-analysis expert-system finance financial-analysis financial-analysis-tools piotroski-f-score python quantitative-analysis rule-based-classifier stock-analysis stock-valuation
Last synced: 02 Mar 2025
https://github.com/jcaperella29/jc_bioinformatics_hub
A personal hub to showcase my bioinformatics applications including RNA-Seq, ATAC-Seq, and miRNA-Seq analysis tools. Powered by simple HTML, CSS, and JavaScript with a biotech-themed design.
atac-seq bioinformatics biotech data-analysis github-pages portal rna-seq webapp
Last synced: 15 May 2025
https://github.com/jcaperella29/meta_analysis-on-rna_seq-data-using-metaseq
A script that performs Meta_analysis on RNA_seq data from multiple studies
Last synced: 02 Mar 2025
https://github.com/jcaperella29/jcap_ai_paper_summarizer
A Flask-based web app that extracts text, summarizes scientific PDFs using Ollama, and retrieves figures from research papers. Supports batch processing via ZIP uploads and provides downloadable summaries.
ai-summarizer batch-processing flask nlp ollama-api pdf-summarizer research-tool scientific-papers
Last synced: 02 Mar 2025
https://github.com/jcaperella29/dicom_processing_flask_app
🏥 DICOM Flask App – AI-Powered Lesion Detection A Flask-based web app for uploading, processing, and analyzing DICOM medical images. Uses DeepLesion (Faster R-CNN) for lesion detection and ResNet50 for classification. Features a multi-tab UI with sidebar navigation. A sample DICOM file is included for testing!
ai-healthcare computer-vision dicom faster-rcnn flask healthcare-ai image-processing lesion-detection medical-imaging python pytorch radiology reset
Last synced: 02 Mar 2025
https://github.com/jcaperella29/clinical-text-mining_r_script
A lightweight R script for text mining and harmonizing medical phenotype data. Cleans, standardizes, and maps diagnoses to ICD-10 codes, with clinical annotations for enhanced data usability.
biomedical-data clinical-informatics data-cleaning data-harmonization database-integration icd-10 machine-learning medical-data nlp-machine-learning one-hot-encoding phenotype r text-mining
Last synced: 02 Mar 2025
https://github.com/jcaperella29/dicom_processing_python
Python script for processing and visualizing DICOM medical images. Supports metadata extraction, multi-frame handling, and compressed image decompression.
dicom-images gdcm image-processing matplotlib medical-imaging radiology
Last synced: 02 Mar 2025
https://github.com/jcaperella29/document_cleaning_cli
A deep learning-based pipeline for cleaning scanned document images. Automatically removes noise, enhances text clarity, and optimizes images for OCR. 🚀
cli-tool computer-vision deep-learning denoising document-processing image-cleaning image-processing ocr pytesseract python scanned-documents
Last synced: 02 Mar 2025
https://github.com/jcaperella29/isoviz_shiny_app
I have prepared a GUI for the new R package ISOVIZ using the Shiny web application framework. it is deployed at the url below.
bioinformatics data-visualisation long-read-sequencing shiny-apps
Last synced: 02 Mar 2025
https://github.com/jcaperella29/rna_seq_app
A SHINY app written in R that will perform differential expression and feature selection on RNA_SEQ data(counts matrix and phenotype data) . The app allow can prepare a PCA plot of your data, a UMAP plot , a volcano plot showing the relationship between log fold change and p-value of your top 20 genes .It also can perform pathway analysis .
Last synced: 02 Mar 2025
https://github.com/jcaperella29/document-cleaning-pipeline
A python script for cleaning documents using a mix of machine learning and rules.
Last synced: 02 Mar 2025
https://github.com/jcaperella29/flask_classification_app
This is a flask web app for classificing and visualization data .It it deployed at the link below.
Last synced: 02 Mar 2025
https://github.com/jcaperella29/script-to-prepare-data-for-wgcna-
An R script that gets mircoarray data ready for WGCNA with cytoscope
Last synced: 02 Mar 2025
https://github.com/jcaperella29/differential-analysis-on-scrna-seq-data-in-r
using Seurat to perform DE analysis on scRNA seq data
Last synced: 02 Mar 2025
https://github.com/jcaperella29/paired_end_fastq_app
A Shiny app for processing FASTQ file and producing files need for downstream analysis
Last synced: 02 Mar 2025
https://github.com/jcaperella29/network-analysis-with-igraph
An R script that will perform network analysis on microdata using the library igraph
Last synced: 02 Mar 2025
https://github.com/jcaperella29/processing-rna_seq-data-with-r-
An R script that reads in RNA_Seq data , preprocesses it , then performs differential expression analysis and feature selection.
Last synced: 02 Mar 2025
https://github.com/jcaperella29/micro_array_shinyapp
A shiny app meant to aid in the analysis of microarray data. This app performs differential expression analysis ,feature selection ,generates a UMAP,PCA and Volcano Plot and performs Pathway Analysis
Last synced: 02 Mar 2025
https://github.com/jcaperella29/python-app-to-preprocess-fastq-files-after-demultiplexing
After the user submits a folder containing FASTQ files , the program will remove the primers and join ends to together. The joined sequences will output as a folder of FASTA files that the user can save
Last synced: 02 Mar 2025
https://github.com/jcaperella29/nuclei_counter-in-python
A python script for nuclei in tiff files complete with a GUI
Last synced: 02 Mar 2025
https://github.com/jcaperella29/sarima-model-in-python
This is python script for building a Autoregressive integrated moving average model . This example is predicting sales over several months.
Last synced: 02 Mar 2025
https://github.com/jcaperella29/regression_neural_network-in-python
This is a Python script that produces a neural network for performing regression analysis.The sample data is regarding car sales but it can be used to predict any continuous variable
Last synced: 02 Mar 2025
https://github.com/jcaperella29/processing-nmr-data-with-r
A script for processing NMR data using R. The script outputs a csv with the entire processed spectra as well as a text file containing some of peeks .The later can be used to map the peeks to chemicals..https://bmrb.io/ can be used to perform such annoation
Last synced: 02 Mar 2025
https://github.com/jcaperella29/processing-results-of-crispr-editing-with-r
A script for processing the result of CRISPR that takes advantage of the Seurat package in R
Last synced: 02 Mar 2025
https://github.com/jcaperella29/website-miner-in-r
An R script that will read text from websites and mine them for key words. This is particular might to mine articles from the web. For example one might get a list of abstracts of interest from Chilibot and then mine the full articles for keywords by entering their urls into script
Last synced: 02 Mar 2025
https://github.com/jcaperella29/gwas-in-r
An R script for processing GWAS data.This produces a Manhattan plot , a cvs file of the results and a text file containing the SNPs met the p-value cutoff for genome wide significance
Last synced: 02 Mar 2025
https://github.com/jcaperella29/ai_llm_set_up
AI-powered research paper summarization using local LLMs (Ollama). Extracts, processes, and summarizes PDFs with structured insights. Ideal for scientific papers & bioinformatics
ai llm machine-learning nlp ollama pdf-processing python research
Last synced: 22 Feb 2025
https://github.com/jcaperella29/facs-data-processing-r-script
An R-script that processes Fluorescence-activated cell sorting (FACS). Gating is used to identify samples that contian live GFP positive cells.
Last synced: 02 Mar 2025