Projects in Awesome Lists by becavin-lab
A curated list of projects in awesome lists by becavin-lab .
https://github.com/becavin-lab/bacnet
BACNET is a Java based platform to develop website for multi-omics analysis
bacnet bioinformatics data-visualization genomics listeria multi-omics proteomics transcriptomics website
Last synced: 09 Apr 2026
https://github.com/becavin-lab/meripseq
MeRIP-Seq pipeline analysis for m6a methylation site detection
Last synced: 09 Apr 2026
https://github.com/becavin-lab/checkatlas
One liner tool to check the quality of your single-cell atlases.
control multiqc python quality scanpy seurat single-cell
Last synced: 09 Apr 2026
https://github.com/becavin-lab/listeriomicssample
Sample dataset used for starting up BACNET demo
Last synced: 09 Apr 2026
https://github.com/becavin-lab/cellranger-to-scanpy
A small python script to import cellranger analysis into Scapy. It loads scRNA-Seq experiment out of cellranger, includes the count matrices, the UMAP+T-SNE reduction, the clustering, and normalized RNA count matrix.
Last synced: 09 Apr 2026
https://github.com/becavin-lab/ripseq-listeria
RIP-Seq and RNA-Seq of an RNA-binding protein secreted by Listeria monocytogenes which activates RIG-I signaling Secreted bacterial
Last synced: 09 Apr 2026
https://github.com/becavin-lab/cellranger-to-seurat
A small R script to import cellranger analysis into Seurat. It includes the count matrices, the UMAP+T-SNE reduction, and the clustering
Last synced: 09 Apr 2026
https://github.com/becavin-lab/rap-e4-war-export
An example eclipse RAP e4 project which can be export to .war file
Last synced: 09 Apr 2026
https://github.com/becavin-lab/nf-core-checkatlas
One liner tool to check the quality of your single-cell atlases.
Last synced: 09 Apr 2026