Projects in Awesome Lists tagged with phyloseq
A curated list of projects in awesome lists tagged with phyloseq .
https://github.com/microbiome/microbiome
microbiome R package
hitchip hitchip-atlas human-microbiome microbiology microbiome microbiome-analysis phyloseq population-study r
Last synced: 16 May 2025
https://github.com/cafferychen777/microbiomestat
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
16s-rrna amplicon-sequencing dada2 longitudinal-data metagenomes metagenomic-analysis microbiome microbiome-analysis microbiome-data microbiome-workflow omics omics-data-integration phyloseq qiime2 statistics visualization
Last synced: 16 Apr 2025
https://github.com/shandley/microbiome-analysis-using-r
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
16s dada2 microbiome phyloseq teaching
Last synced: 23 Mar 2025
https://github.com/erictleung/phyloseq-cheatsheet
:notebook: Minimal cheatsheet for functions in the phyloseq R package
bioconductor bioinformatics cheatsheet data-analysis microbiome microbiota notes phyloseq r
Last synced: 25 Mar 2025
https://github.com/shandley/dada2-workflow
Generalized dada2 workflow. Refer to the wiki for help and troubleshooting.
16s 16s-rrna asv dada2 microbiome phyloseq
Last synced: 23 Mar 2025
https://github.com/shgopher/rfamily
R 语言基础，数据分析， 可视化，生物以及临床医学研究
bioconductor deseq2 dplyr ggplot2 ggvis lubridate phyloseq tidyr
Last synced: 20 Feb 2025
https://github.com/shandley/human_volunteer_rotabiome
Analysis of 16S rRNA (dada2 amplicon sequence variants) from human volunteers given various vaccines following two different antibiotics treatments compared to no antibiotics.
Last synced: 23 Mar 2025
https://github.com/microsud/gut-microbiota-celiac-disease
R scripts used for analysis of data reported in Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Patients with Celiac Disease and Controls
amplicon-sequencing celiac-disease gluten microbiome microbiota microbomer phyloseq
Last synced: 16 May 2025
