Projects in Awesome Lists by microsud
A curated list of projects in awesome lists by microsud .
https://github.com/microsud/tools-microbiome-analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
16s-rrna amplicon amplicon-sequencing metagenomics microbial-communities microbiome-analysis microbiome-data microbiota
Last synced: 16 May 2025
https://github.com/microsud/microbiomeutilities
The is mostly a wrapper tool using phyloseq and microbiome R packages.
16s amplicon core-microbiome metagenomics microbial-communities microbiome microbiome-analysis qc-pipeline sequencing
Last synced: 16 May 2025
https://github.com/microsud/dysbiosisr
The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
dysbiosis dysbiosis-score microbiome-dysbiosis-index microbiome-dysbiosis-score microbiota
Last synced: 16 May 2025
https://github.com/microsud/syncomr
R package with wrapped functions for synthetic microbial community analysis.
Last synced: 16 May 2025
https://github.com/microsud/indian-gut-microbiota
Data and analysis code for the Indian gut microbiota study
gut-microbiome gut-microbiota-features microbiota
Last synced: 16 May 2025
https://github.com/microsud/chkmocks
Check your mock communities from microbiome sequencing experiments
Last synced: 16 May 2025
https://github.com/microsud/intestinal-microbiome-western-adults
Files and codes used for analysis of data reported in the review by Shetty et al. 2016.
Last synced: 16 May 2025
https://github.com/microsud/db-mm-10
Synthetic gut minimal microbiome with 10-core species
Last synced: 16 May 2025
https://github.com/microsud/microbiomeutilities-shiny
Try it out- Want to develop this as a teaching tool to demonstrate commonly done microbial diversity analysis methods/concepts
Last synced: 16 May 2025
https://github.com/microsud/microbiomedatarepo
Access to few of the publicly available gut microbiome data sets as part of the microbiomeutilities R package
Last synced: 16 May 2025
https://github.com/microsud/jeevanudb
Example data sets and other data type for microbiome package https://github.com/microbiome/microbiome
Last synced: 16 May 2025
https://github.com/microsud/gut-microbiota-celiac-disease
R scripts used for analysis of data reported in Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Patients with Celiac Disease and Controls
amplicon-sequencing celiac-disease gluten microbiome microbiota microbomer phyloseq
Last synced: 16 May 2025
https://github.com/microsud/microbiometutorials.gihub.io
This website gives an introduction to microbial community analysis.
16s microbiome-analysis microbiome-tutorials
Last synced: 16 May 2025
https://github.com/microsud/teachingmib20306
Teaching MIB20306: Interactive app created to teach proteomics guided investigation of bacterial metabolism. We use Intestinimonas butyriciproducens as example.
Last synced: 16 May 2025
https://github.com/microsud/microbiometemplate
A Rmarkdown template for microbial community analysis.
Last synced: 16 May 2025