https://github.com/microbiome/microbiome

microbiome R package

hitchip hitchip-atlas human-microbiome microbiology microbiome microbiome-analysis phyloseq population-study r

Last synced: 16 May 2025

https://github.com/microbiome/oma

Orchestrating Microbiome Analysis

bioconductor microbiome microbiome-analysis-book r

Last synced: 16 May 2025

https://github.com/microbiome/mia

Microbiome analysis

analysis bioconductor microbiome

Last synced: 16 May 2025

https://github.com/microbiome/miasim

microbiome data simulation package

Last synced: 16 May 2025

https://github.com/microbiome/tutorials

Tutorials

Last synced: 16 May 2025

https://github.com/microbiome/course_2021_radboud

Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/

Last synced: 14 Jul 2025

https://github.com/microbiome/miaviz

Microbiome Analysis Plotting and Visualization

bioconductor microbiome microbiome-analysis plotting visualization

Last synced: 22 Aug 2025

https://github.com/microbiome/microbiomedatasets

Experiment Hub based microbiome datasets

bioconductor experiment-hub microbiome microbiome-datasets

Last synced: 04 Jul 2025

https://github.com/microbiome/miatime

Microbiome time series analysis

Last synced: 16 May 2025

https://github.com/microbiome/iseetree

extension of iSEE for TreeSE

microbiome shiny-apps visualisation

Last synced: 20 Jul 2025

https://github.com/microbiome/course_2022_miaverse

Last synced: 16 May 2025

https://github.com/microbiome/nmgs

Neutral model

Last synced: 19 Sep 2025

https://github.com/microbiome/miademo

Last synced: 16 May 2025

https://github.com/microbiome/miadash

Dashboard for microbiome data analysis with mia

bioinformatics dashboard gui isee mia microbiome shiny visualisation webapp

Last synced: 10 Apr 2025

https://github.com/microbiome/miaDash

Dashboard for microbiome data analysis with mia

bioinformatics dashboard gui isee mia microbiome shiny visualisation webapp

Last synced: 27 Mar 2025

https://github.com/microbiome/miacourse

Last synced: 25 Jan 2026

https://github.com/microbiome/course_2022_turku

Last synced: 17 Feb 2026

https://github.com/microbiome/microbiome.github.com

microbiome project - home page

Last synced: 16 May 2025

https://github.com/microbiome/rpa

Robust Probabilistic Averaging

Last synced: 16 May 2025

https://github.com/microbiome/course_2023_bergen

Last synced: 12 Feb 2026

https://github.com/microbiome/course_2023_oulu

Oulu 2023 course

Last synced: 25 Jan 2026

https://github.com/microbiome/course_mia

Last synced: 25 Jan 2026

https://github.com/microbiome/course_2022_oulu

Last synced: 20 Jan 2026

https://github.com/microbiome/data

Microbiome datasets of the mia ecosystem

Last synced: 20 Jan 2026

https://github.com/microbiome/outreach

Publications, slides, and posters

Last synced: 20 Jan 2026

https://github.com/microbiome/oma_manuscript

Last synced: 20 Jan 2026

https://github.com/microbiome/benchmarking

Benchmarking miaverse performance

Last synced: 16 May 2025

https://github.com/microbiome/course_2021_ml4microbiome

Course ML4microbiome

Last synced: 16 May 2025

https://github.com/microbiome/course_2022_findingpheno

FindingPheno workshop

Last synced: 16 May 2025

https://github.com/microbiome/microbiome-lesson

Microbiome data science with R/Bioconductor

Last synced: 29 May 2026

https://github.com/microbiome/docker

Docker container/s for miaverse

Last synced: 15 Feb 2026

https://github.com/microbiome/course_nijmegen2019

Educational material for the Nijmegen September 2019 course

Last synced: 24 Jan 2026

https://github.com/microbiome/examples

Example solutions to programming tasks

Last synced: 24 Jan 2026