Projects in Awesome Lists by vmikk
A curated list of projects in awesome lists by vmikk .
https://github.com/vmikk/metagmisc
Miscellaneous functions for metagenomic analysis.
Last synced: 02 Dec 2024
https://github.com/vmikk/phylonext
A pipeline for phylogenetic diversity analysis of GBIF-mediated data
beta-diversity biodiverse docker endemism gbif nextflow phylodiversity phylogenetic-diversity r randomisations singularity
Last synced: 02 Dec 2024
https://github.com/vmikk/nextits
A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio
eukaryotes fungi internal-transcribed-spacer its metabarcoding nextflow pacbio pipeline
Last synced: 10 Apr 2025
https://github.com/vmikk/tshbot
Execute shell commands via Telegram
bash bot linux remote-control shell telegram
Last synced: 30 Jan 2025
https://github.com/vmikk/phylonest
Equivalent numbers for species, phylogenetic or functional diversity in a nested hierarchy of multiple scales
Last synced: 24 Mar 2025
https://github.com/vmikk/pipebutton
Instant bioinformatics analysis at the push of a button
Last synced: 24 Mar 2025
https://github.com/vmikk/selfing-rate
R functions used to perform the analysis of COLONY and RMES output, and COLONY simulation.
Last synced: 24 Mar 2025
https://github.com/vmikk/seqhasher
SeqHasher - A tool for hashing individual sequences in FASTA files
dna-sequences fasta fastq hashing
Last synced: 24 Mar 2025
https://github.com/vmikk/symlink2file
Replace symlinked files with their original files
Last synced: 24 Mar 2025
https://github.com/vmikk/anova
Shiny application to conduct heteroscedasticity consistent ANOVA (in Russian)
anova biostatistics statistics
Last synced: 24 Mar 2025
https://github.com/vmikk/goclust
Clustering tool for sparse matrices produced by USEARCH
Last synced: 24 Mar 2025
https://github.com/vmikk/biodiverse-docker
Docker and Singularity images to run Biodiverse software
biodiversity docker endemism phylogenetic-diversity singularity
Last synced: 30 Jan 2025
https://github.com/vmikk/phredsort
`phredsort` is a cli tool for sorting sequences in a FASTQ file by their quality scores
bash bioinformatics cli fastq phred-quality-scores sequence-quality
Last synced: 11 Mar 2025
https://github.com/vmikk/rp2040-oled-monitor
RP2040-based external monitor for a Linux-based host
Last synced: 16 May 2025
https://github.com/vmikk/kiaglm
Shiny application to check GLM robustness to influential observations
Last synced: 24 Mar 2025
https://github.com/vmikk/amplispike
Analysis of amplicon sequencing data with synthetic spike-in standards
amplicon-sequencing metagenomics r
Last synced: 24 Mar 2025
https://github.com/vmikk/soil_zoology_2021
Материалы мастер класса по анализу данных метабаркодинга (VII полевая школа по почвенной зоологии и экологии)
Last synced: 24 Mar 2025
https://github.com/vmikk/phylonext_manuscript
Data and scripts accompanying the PhyloNext manuscript
Last synced: 24 Mar 2025
https://github.com/vmikk/phylotwin-preprocessor
Species occurrence pre-processing pipeline
Last synced: 24 Mar 2025
https://github.com/vmikk/shmatcher
Species hypothesis (SH) matching analysis tool
Last synced: 24 Mar 2025
https://github.com/vmikk/vmik
Vladimir Mikryukov's miscellaneous R functions
Last synced: 24 Mar 2025