Projects in Awesome Lists by sequana
A curated list of projects in awesome lists by sequana .
https://github.com/sequana/sequana
Sequana: a set of Snakemake NGS pipelines
coverage de-novo ngs pacbio rna-seq sequanix snakemake taxonomy variant-calling
Last synced: 17 Jan 2026
https://github.com/sequana/rnaseq
RNA-seq, QC and differential analysis pipeline
differential-analysis ngs pipeline rna-seq sequana workflow
Last synced: 20 Aug 2025
https://github.com/sequana/sequanix
Sequanix is a graphical user interface (GUI) that can be used to run Snakemake workflows.
Last synced: 08 Apr 2025
https://github.com/sequana/fastqc
sequana pipeline to perform parallel fastqc and summarize results with multiqc plot
Last synced: 08 Apr 2025
https://github.com/sequana/mergegi
MergeGI provides a single command line to merge and select barcoded raw data from MGI sequencing runs into a set of FastQ files ready for subsequent bioinformatics analysis.
Last synced: 08 Apr 2025
https://github.com/sequana/multicov
Snakemake pipeline wrapping sequana_coverage to analyse several samples at the same time
Last synced: 08 Apr 2025
https://github.com/sequana/sequana_pipetools
A set of tools to help building or using sequana pipelines
Last synced: 10 Sep 2025
https://github.com/sequana/nanomerge
Pipeline utility to perform merge of barcoded nanopore runs
Last synced: 08 Mar 2026
https://github.com/sequana/laa
Pacbio amplicon, sequana, phylogeny, variant
Last synced: 15 Apr 2025
https://github.com/sequana/bioconvert
convert files from one format to another using bioconvert
Last synced: 02 Apr 2026
https://github.com/sequana/depletion
Deplete Fastq files from human or other content
Last synced: 25 Aug 2025
https://github.com/sequana/lora
Run assembler (Canu, flye, hifiasm) on a set of long read files
Last synced: 22 Jan 2026
https://github.com/sequana/quality_control
A quality control pipeline for illumina data set. This pipeline removes contaminants (e.g. Phix), performs fastqc, adapter cleaning and trimming and checks for contaminants
Last synced: 17 Apr 2026
https://github.com/sequana/sequana-wrappers-lite
a light version of sequana-wrappers repository
Last synced: 29 Oct 2025
https://github.com/sequana/sequana_merge_flowcells
merge 2 or more flowcells (with identical design) into a single set of FastQ files
Last synced: 15 Apr 2025
https://github.com/sequana/ribofinder
Workflow to find ribosomal feature in set of FastQ files
Last synced: 18 Aug 2025
https://github.com/sequana/revcomp
A simple utility to convert a bunch of input fastq files into their reverse complement
Last synced: 18 Aug 2025
https://github.com/sequana/sequana_pipeline_template
a cookiecutter sequana pipeline template
Last synced: 11 Feb 2026
https://github.com/sequana/sequana-wrappers
The Sequana Wrapper Repository is a collection of reusable wrappers used in Sequana Pipelines.
Last synced: 03 Feb 2026
https://github.com/sequana/sequana_sphinxext
sphinx extensions for sequana documentation
Last synced: 06 Oct 2025
https://github.com/sequana/versionix
Versionix is a lightweight tool designed to display the version of standalone software directly on the screen, handling various versioning formats.
Last synced: 05 Oct 2025
https://github.com/sequana/data
Set of large static data files to be used for testing within Sequana
Last synced: 22 Jan 2026