Projects in Awesome Lists tagged with protein-alignment

https://github.com/rcedgar/muscle

Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

algorithms bioinformatics biology nucleotide-alignment protein-alignment protein-structure protein-structure-alignment sequence-clustering sequence-search

Last synced: 12 Apr 2025

https://github.com/rcedgar/usearch12

Open-source usearch

bioinformatics bioinformatics-algorithms computational-biology nucleotide-alignment protein-alignment protein-sequences search-algorithms

Last synced: 19 Apr 2025

https://github.com/rvhonorato/cealign

Implementation of the Combinatorial Extension (cealign) algorithm to align protein structures

protein-alignment rust structural-biology

Last synced: 25 Mar 2025

https://github.com/nolantrem/sars-cov-protein-finding

FASTA Alignment search for BsaI and BsmBI restriction sites in the ORF6 protein to verify assertions made by Bruttel, et. al. in "Endonuclease fingerprint indicates a synthetic origin of SARS-CoV-2."

computational-biology protein-alignment sars-cov-2

Last synced: 26 Mar 2025

https://github.com/applicativesystem/maf-analyzer-awk

maf alignments from protein to genome alignments using awk

awk awk-programming-language awk-script bioinformatics genome-alignment genome-analysis genome-anntoation protein-alignment protein-alignments

Last synced: 03 Apr 2025

https://github.com/applicativesystem/miniprot-protein-annotator

miniprot protein alignment analyzer

bioinformatics genome-alignment genome-analysis genome-annotation genome-bioinformatics genome-informatics protein-alignment

Last synced: 16 Dec 2024

https://github.com/applicativesystem/genome-alignment

genome and transcriptome alignment extraction

bioinformatics genome-alignment genome-alignments genome-analysis protein-alignment protein-alignments protein-genome-alignment

Last synced: 03 Apr 2025

https://github.com/ibchgenomic/coding-stitcher-pangenome

stitching coding regions from exon alignments for the protein to genome alignments.

bioinformatics genome-alignment genome-alignments genome-annotation gff-toolkit gff3 gff3-format protein-alignment protein-alignments

Last synced: 30 Mar 2025

https://github.com/applicativesystem/compleasm-awk

compleasm genome coverage analysis using awk

awk awk-programming-language awk-script bioinformatics genome-alignment genome-alignment-utilites genome-analysis genome-annotation genome-annotation-analysis protein-alignment

Last synced: 03 Apr 2025

https://github.com/gauravcodepro/coding-stitcher-pangenome

a coding sticher for genome annotations, which stitch all your coding regions coming out of the exon alignments and will produce the gene visualization for the pangenome

annotation-tool bioinformatics bioinformatics-algorithms genome-alignment genome-annotation protein-alignment protein-sequences