Projects in Awesome Lists tagged with transcriptome-assembly

A curated list of projects in awesome lists tagged with transcriptome-assembly .

- Recently synced
- Stars

https://github.com/ablab/spades

SPAdes Genome Assembler

genome-assembly illumina metagenome-assembly next-generation-sequencing sequence-assembler sequencing transcriptome-assembly

Last synced: 21 Oct 2025

https://github.com/bcgsc/transabyss

de novo assembly of RNA-seq data using ABySS

bioinformatics rna-seq transcriptome transcriptome-assembly

Last synced: 07 May 2025

https://github.com/ablab/rnaquast

Quality assessment of de novo transcriptome assemblies from RNA-Seq data

quality-evaluation transcriptome-assembly

Last synced: 21 Oct 2025

https://github.com/bcgsc/chopstitch

Finding putative exons and constructing splicegraphs using Trans-ABySS contigs

bloom-filter exon putative-exons splice splice-graphs transcriptome-assembly

Last synced: 07 May 2025

https://github.com/dn070017/quanteval

QuantEval is an analysis pipeline which evaluate the reliability of quantification tools.

connected-components quantification-evaluation-methods transcriptome-assembly

Last synced: 11 Oct 2025

https://github.com/zyxue/vr2c

Visualize read-to-contig alignment during assembly analysis

alignment contig-coverage contigs genome-assembly read-to-contig-alignment transcriptome-assembly

Last synced: 30 Mar 2025

https://github.com/codebiogenomics/trinity-analyzer

from trinity assembly to deep learning

genome-analysis genome-annotation transcriptome-annotation transcriptome-assembly trinity

Last synced: 15 Aug 2025

https://github.com/zyxue/kleat

Cleavage site prediction via de novo assembly

alternative-polyadenylation cleavage-sites de-novo-assembly rna-seq transcriptome-assembly

Last synced: 20 Jan 2026

https://github.com/sivkri/rna-seq-scaledlengthtpm

To perform RNA-Seq data analysis and calculate length-scaled transcripts per million (TPM) values using the Salmon tool and the GenomicFeatures package in R.

gene-expression genomics genomics-analysis rna-seq rna-seq-analysis rnaseq tpm transcriptome-assembly transcripts-per-million

Last synced: 19 Jul 2025

https://github.com/gauravcodepro/tair-gff-ids

A set of functions which will provide easy access and cleaned gff from tair and uses a dataframe and datascience approach to get the systematic tair ids and their coordinates from the tair 10 gff version. It can be applied to any version of the tair for getting the systematic retrival of the tair ids.

genome genome-analysis genome-annotation genome-assembly genome-sequencing tair tair3 transcriptome-annotation transcriptome-assembly