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Projects in Awesome Lists tagged with bacterial-genome-analysis
A curated list of projects in awesome lists tagged with bacterial-genome-analysis .
https://github.com/npavlovikj/prokevo
ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.
bacterial-genome-analysis high-performance-computing high-throughput-computing osg pegasus-workflow-management
Last synced: 14 Oct 2024
https://github.com/gauravcodepro/ko-phylogenomics
analyzing bacterial genome based ontologies and phylogenomics informativeness
bacterial-genome-analysis bacterial-genomes geneontology genome-annotation ontologies ontology plant plantgenomes
Last synced: 09 Nov 2024
https://github.com/gauravcodepro/domain-graphs
interpro to graphs for analyzing domains.
annotation-tool bacterial-genome-analysis bacterialmetagenomics directed-acyclic-graph directed-graphs fungal-metagenomics graph-algorithms interproscan protein-protein-interaction proteindomains
Last synced: 09 Nov 2024
https://github.com/gauravcodepro/trinity-blast-machine-learning
a scalable and faster implementation for the genome and the transcriptome annotations for large scale sequencing datasets.
bacterial-genome-analysis bacterial-genomes genome-annotation genome-assembly plantgenomes plantgenomics transcriptome-annotation transcriptome-assembly transcriptome-profiling-data transcriptome-wide transcriptomics trinity
Last synced: 09 Nov 2024
https://github.com/gauravcodepro/pangenomemetagenomicsnormalizer
a pangenome metagenomics normalizer, given a gene ontology based presence and absence and a species file, it first summarizes the count across the species and then takes the count of the gene ontologies and present a ratio The higher the ratio the more presence of that ontology across the species.
bacterial-genome-analysis bacterialmetagenomics bioinformatics fungal-metagenomics metagenomics metagenomics-counts pangenomics
Last synced: 09 Nov 2024
https://github.com/gauravcodepro/ontology-annotation-count
a function to calculate the genome annotation for the microbiome and also for the other genomes. It will take a genome annotation or a text file and will prepare the count and also for the gene ontology analysis
bacterial-genome-analysis bacterial-genomes genome genome-analysis genome-annotation genome-sequencing microbiome microbiome-analysis plantgenomes plantgenomics
Last synced: 09 Nov 2024
https://github.com/gauravcodepro/domain-analyzer
This repository contains a datascience based faster implementation of the domain predictions from the interpro scan and it will give you a complete domains information, coordinates and other associative information. I used a mapping dataframe approach to make it faster rather than looping it over and over.
bacterial-genome-analysis bacterial-genomes domains functional-programming functionaldomains fungal-genomes fungaleffectors interproscan plantgenomes protein-sequence protein-structure proteindomains
Last synced: 09 Nov 2024
https://github.com/gauravcodepro/evolutionary-rate-analyer
A R function for the analysis of the evolutionary rates from the fasta files, and uses the ka/ks and the dn/ds and plots the evolutionary rates.
bacterial-genome-analysis bacterial-genomes bioinformatics evolution evolutionary-computation fungal-genomes fungal-metagenomics plantgenomics rprogramming
Last synced: 09 Nov 2024
https://github.com/gauravcodepro/bacterial-keras
A keras implementation of machine learning for bacterial genomes, takes a fasta file and the annotation features and the genes you want to train the keras model
bacterial-genome-analysis bacterial-genomes keras machinelearning
Last synced: 09 Nov 2024