Projects in Awesome Lists tagged with epidemiology

https://github.com/worldhealthorganization/app

COVID-19 App

appengine-java coronavirus covid-19 dart epidemiology firebase flutter

Last synced: 30 Sep 2024

https://github.com/WorldHealthOrganization/app

COVID-19 App

appengine-java coronavirus covid-19 dart epidemiology firebase flutter

Last synced: 01 Aug 2024

https://github.com/ryansmcgee/seirsplus

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

coronavirus covid covid-19 epidemic-model epidemic-simulations epidemics epidemiology epidemiology-analysis sars-cov-2

Last synced: 02 Aug 2024

https://github.com/DataForScience/Epidemiology101

Epidemic Modeling for Everyone

blog covid-19 epidemiology medium modeling python

Last synced: 09 Aug 2024

https://github.com/EpiModel/EpiModel

Mathematical Modeling of Infectious Disease Dynamics

agent-based-modeling epidemics epidemiology infectious-diseases network-graph

Last synced: 01 Aug 2024

https://github.com/InstituteforDiseaseModeling/covasim

COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

abm agent-based contact-tracing coronavirus covid covid-19 epidemiology model npi simulation stochastic

Last synced: 01 Aug 2024

https://github.com/lindbrook/cholera

R Package for Analyzing John Snow's 1854 Cholera Map

cholera data-visualization datasets epidemiology john-snow public-health r triangulation-delaunay voronoi voronoi-polygons

Last synced: 02 Oct 2024

https://github.com/circuitscape/circuitscape.jl

Algorithms from circuit theory to predict connectivity in heterogeneous landscapes

animal-movement circuit-analysis climate-change epidemiology forest-fire julia julia-language landscape-ecology landscape-genetics movement-ecology sparse-linear-systems

Last synced: 29 Sep 2024

https://github.com/wxwx1993/PM_COVID

Public Available Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States: Strengths and limitations of an ecological regression analysis."

air-pollution covid-19 epidemiology mortality

Last synced: 05 Aug 2024

https://github.com/BioDynaMo/biodynamo

BioDynaMo is a high-performance and modular, agent-based simulation platform.

agent-based agent-based-framework agent-based-modelling biology cancer epidemiology high-performance large-scale modular-design neuroscience parallel simulation

Last synced: 08 Aug 2024

https://github.com/benedekrozemberczki/spatiotemporal_datasets

Spatiotemporal datasets collected for network science, deep learning and general machine learning research.

analytics benchmark data-science dataset deep-learning deepwalk epidemiology gcn gnn machine-learning node2vec pytorch pytorch-geometric spatial-analysis spatial-data spatial-data-analysis time-series time-series-analysis vector-autoregression

Last synced: 02 Aug 2024

https://github.com/kendrickorg/kendrick

Domain-Specific Modeling for Epidemiology

dsl epidemiology infectious-diseases mathematical-modelling model-driven-engineering pharo pharo-smalltalk smalltalk

Last synced: 30 Sep 2024

https://github.com/KendrickOrg/kendrick

Domain-Specific Modeling for Epidemiology

dsl epidemiology infectious-diseases mathematical-modelling model-driven-engineering pharo pharo-smalltalk smalltalk

Last synced: 03 Aug 2024

https://github.com/ecohealthalliance/epitator

EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and EIDR Connect.

disease-surveillance epidemiology geonames nlp spacy toponym-resolution

Last synced: 30 Sep 2024

https://github.com/EcoJulia/EcoSISTEM.jl

Julia package for ecosystem simulation

biodiversity ecology ecosystem-simulation epidemiology julia simulation

Last synced: 03 Aug 2024

https://github.com/R4EPI/sitrep

Report templates and helper functions for applied epidemiology

epidemiology msf outbreaks r-package report-generator

Last synced: 13 Aug 2024

https://github.com/epiverse-trace/epiparameter

R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters

data-access data-package epidemiology epiverse probability-distribution r r-package

Last synced: 13 Aug 2024

https://github.com/reconhub/aweek

Convert dates to arbitrary week definitions :calendar:

date-formatting dates epidemiology r r-package timeseries week

Last synced: 13 Aug 2024

https://github.com/juliahealth/icd_gems.jl

ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).

cdc clinical-data clinical-research data death-certificates epidemiology health-data icd-10 icd-10-cm icd-9 icd-codes julia julia-language julia-package mortality-data public-health who

Last synced: 02 Oct 2024

https://github.com/brad-cannell/freqtables

Quickly make tables of descriptive statistics (i.e., counts, percentages, confidence intervals) for categorical variables. This package is designed to work in a tidyverse pipeline, and consideration has been given to get results from R to Microsoft Word ® with minimal pain.

categorical-data data-analysis descriptive-statistics epidemiology r

Last synced: 13 Aug 2024