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Projects in Awesome Lists tagged with fungal-metagenomics

A curated list of projects in awesome lists tagged with fungal-metagenomics .

https://github.com/gauravcodepro/pangenomemetagenomicsnormalizer

a pangenome metagenomics normalizer, given a gene ontology based presence and absence and a species file, it first summarizes the count across the species and then takes the count of the gene ontologies and present a ratio The higher the ratio the more presence of that ontology across the species.

bacterial-genome-analysis bacterialmetagenomics bioinformatics fungal-metagenomics metagenomics metagenomics-counts pangenomics

Last synced: 09 Nov 2024

https://github.com/gauravcodepro/fungal-its-coverage-calculator

I coded this function to estimate the fraction of the ITS predictions from the fungal metagenomics and it estimates by taking into account the sequence length and also the ITS1 and ITS2 start and stop coordinates. Provided a keyworded argument, it estimates the coverage accordingly

bioinformatics fungal-genomes fungal-its fungal-metagenomics fungalgenomics metagenomics metagenomics-data

Last synced: 09 Nov 2024

https://github.com/gauravcodepro/evolutionary-rate-analyer

A R function for the analysis of the evolutionary rates from the fasta files, and uses the ka/ks and the dn/ds and plots the evolutionary rates.

bacterial-genome-analysis bacterial-genomes bioinformatics evolution evolutionary-computation fungal-genomes fungal-metagenomics plantgenomics rprogramming

Last synced: 09 Nov 2024