Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists tagged with rnaseq
A curated list of projects in awesome lists tagged with rnaseq .
https://github.com/COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
10x bioinformatics c-plus-plus gene-expression quantification quasi-mapping rna-seq rna-seq-quantification rnaseq sailfish salmon scrna-seq selective-alignment single-cell single-cell-rna-seq transcriptome
Last synced: 03 Aug 2024
https://github.com/galaxyproject/training-material
A collection of Galaxy-related training material
chip-seq hacktoberfest materials metagenomics ngs proteomics rnaseq training tutorial usegalaxy
Last synced: 01 Aug 2024
https://github.com/sdparekh/zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
barcodes dge expression fastq pipeline rna-seq rnaseq single-cell umi
Last synced: 01 Aug 2024
https://github.com/earmingol/cell2cell
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
bioinformatics bulk-rna-seq cell-cell-communication cell-cell-interaction computational-biology machine-learning rna-seq rnaseq sc-rna-seq single-cell single-cell-rna-seq
Last synced: 02 Aug 2024
https://github.com/Novartis/pisces
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
bioinformatics bioinformatics-pipeline rnaseq rnaseq-pipeline salmon transcriptomics
Last synced: 26 Sep 2024
https://github.com/massiddamt/rna_vc_docker
A Snakemake pipeline for RNA Seq Variant Calling
pipeline rnaseq snakemake-workflow
Last synced: 02 Oct 2024
