Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by mikelove
A curated list of projects in awesome lists by mikelove .
https://github.com/mikelove/bioc-refcard
Bioconductor cheat sheet
bioconductor bioinformatics cheatsheet compbio guide howto microarray r rnaseq
Last synced: 01 Nov 2024
https://github.com/mikelove/prenivolumabonnivolumab
EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
Last synced: 12 Oct 2024
https://github.com/mikelove/zinbwave-deseq2
Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
Last synced: 12 Oct 2024
https://github.com/mikelove/alpine
Modeling and correcting fragment sequence bias for RNA-seq
Last synced: 27 Oct 2024
https://github.com/mikelove/asthma
RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
Last synced: 12 Oct 2024
https://github.com/mikelove/mrlocus
Older repo for MRLocus. See new website for software usage guide:
eqtl gwas gwas-summary-statistics mendelian-randomization
Last synced: 12 Oct 2024
https://github.com/mikelove/shinyma
example of shiny plots which react to clicking on points
Last synced: 12 Oct 2024
https://github.com/mikelove/alevin2bioc
Importing alevin scRNA-seq counts into R/Bioconductor
Last synced: 12 Oct 2024
https://github.com/mikelove/salmon_kallisto_diffs
Salmon vs kallisto on GEUVADIS and SEQC
Last synced: 12 Oct 2024
https://github.com/mikelove/zinbwave-apeglm
Workflow for ZINB-WaVE + apeglm intergration for single-cell RNA-seq
Last synced: 12 Oct 2024
https://github.com/mikelove/swimdown
Code for generating and evaluating the simulation for "Swimming Downstream"
Last synced: 12 Oct 2024
https://github.com/mikelove/apeglmpaper
Code and data objects related to the apeglm paper
Last synced: 12 Oct 2024
https://github.com/mikelove/plyrangestximetacasestudy
A case study for the combination of plyranges and tximeta Bioconductor packages
Last synced: 12 Oct 2024
https://github.com/mikelove/fastqctheoreticalgc
R package for generating theoretical GC content curves for the FASTQC module
Last synced: 12 Oct 2024
https://github.com/mikelove/swish-demos
Demo of analyses using Swish from the fishpond Bioc package
dge dte fishpond non-parametric rna-seq swish
Last synced: 12 Oct 2024
https://github.com/mikelove/bioc2015rnaseq
materials for the Bioc2015 RNA-seq workshop
Last synced: 12 Oct 2024
https://github.com/mikelove/bioc-f1000r
Data and code for workflows posted to Bioconductor Channel on F1000Research
Last synced: 12 Oct 2024
https://github.com/mikelove/plyrangesmlmisc
miscellaneous ideas of plyranges implementations or extensions
Last synced: 12 Oct 2024
https://github.com/mikelove/crohns
Tutorial for ENAR using RNA-seq of patients with Crohn's disease and controls
Last synced: 12 Oct 2024
https://github.com/mikelove/airway2
Salmon quantification files for the "airway" dataset
Last synced: 12 Oct 2024
https://github.com/mikelove/mrlocuspaper
Repository of the code used in the MRLocus paper. For the software see: https://mikelove.github.io/mrlocus
Last synced: 12 Oct 2024
https://github.com/mikelove/tximportdata
THIS REPO IS NOT CURRENT, USE BIOC
Last synced: 12 Oct 2024
https://github.com/mikelove/airway_quants
Salmon quantifications of samples from the Bioconductor 'airway' package
Last synced: 12 Oct 2024
https://github.com/mikelove/denovo-tximeta
Use of tximeta with a denovo transcriptome
Last synced: 12 Oct 2024
https://github.com/mikelove/polyesteralpinems
A fork of the polyester software, used in the alpine manuscript.
Last synced: 12 Oct 2024
https://github.com/mikelove/s4demo
Minimal demo of a simple S4 method and class setup
Last synced: 12 Oct 2024
https://github.com/mikelove/deseq-large-dim
Working space for a faster approximation to DESeq2 for large dimensional datasets
Last synced: 12 Oct 2024
https://github.com/mikelove/bayes-hier-model
Lecture slides for Bayesian Hierarchical Models
Last synced: 12 Oct 2024
https://github.com/mikelove/bottomly
Updating the bottomly_sumexp object from DESeq2 paper
Last synced: 12 Oct 2024
https://github.com/mikelove/shiny_demo_igvf
R/Shiny demo accessing data via IGVF Catalog API
Last synced: 12 Oct 2024
https://github.com/mikelove/lnc_mouse_brain
Quantification of a subset of samples from Goff et al 2015 PMC4460505
Last synced: 12 Oct 2024
https://github.com/mikelove/ismb2014biocrnaseq
Bioconductor RNA-Seq workflows (code is in gh-pages branch)
Last synced: 12 Oct 2024
https://github.com/mikelove/bioc2022allelicexpression
Bioc2022 workshop. SEESAW: Statistical Estimation Of Allelic Expression Using Salmon And Swish
allelic-expression bioconductor fishpond rnaseq salmon swish
Last synced: 12 Oct 2024
https://github.com/mikelove/macrophage
Macrophage immune stimulation: IFNɣ and/or Salmonella infection
Last synced: 12 Oct 2024
https://github.com/mikelove/spatialdmelxsim
Data from Combs and Fraser, "Spatially varying cis-regulatory divergence..." (2018)
Last synced: 12 Oct 2024
https://github.com/mikelove/bigwigviews
R version of desired BigWigViews function
Last synced: 12 Oct 2024