Projects in Awesome Lists tagged with speaqeasy
A curated list of projects in awesome lists tagged with speaqeasy .
https://github.com/lieberinstitute/speaqeasy
SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.
hisat2 nextflow pipeline rna-seq-pipeline rnaseq rstats speaqeasy
Last synced: 23 Mar 2025
https://github.com/lieberinstitute/rnaseq-pipeline
Original version of the RNA-seq pipeline implemented in SPEAQeasy at https://github.com/LieberInstitute/SPEAQeasy.
Last synced: 07 May 2025
https://github.com/lieberinstitute/speaqeasyworkshop2020
EuroBioc2020 SPEAQeasy workshop https://eurobioc2020.bioconductor.org by Nick Eagles and Josh Stolz. For more information about SPEAQeasy check http://research.libd.org/SPEAQeasy/. For an example on how to use this RNA-seq processing pipeline and analyze the output files check http://research.libd.org/SPEAQeasy-example/.
bioconductor limma nextflow nextflow-pipelines rnaseq-pipeline rstats speaqeasy
Last synced: 28 Jan 2025
https://github.com/lieberinstitute/speaqeasy-example
Full length example for SPEAQeasy
Last synced: 23 Mar 2025