Projects in Awesome Lists tagged with hisat2

A curated list of projects in awesome lists tagged with hisat2 .

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https://github.com/juke34/aline

Nextflow Alignment Pipeline - DNAseq RNAseq

bbmap bowtie bowtie2 bwa bwa-mem bwa-sw graphmap2 hisat2 kallisto minimap2 nextflow ngmlr novoalign nucmer star sublong subread

Last synced: 05 Mar 2025

https://github.com/lieberinstitute/speaqeasy

SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.

hisat2 nextflow pipeline rna-seq-pipeline rnaseq rstats speaqeasy

Last synced: 23 Mar 2025

https://github.com/hernanmd/hisat2_bovine

Scripts to index and align Bovine genome with HISAT2

bash bioinformatics featurecounts genome genome-alignment gff3 hisat2

Last synced: 22 Feb 2025

https://github.com/morgan-feuz/hisat2-alignment

Guide for aligning reads to a reference genome with HISAT2.

hisat2 linux

Last synced: 18 Feb 2025